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WormBase Tree Display for Gene: WBGene00004204

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Name Class

WBGene00004204SMapS_parentSequenceCHROMOSOME_IV
IdentityVersion2
NameCGC_nameswsn-4Person_evidenceWBPerson552
WBPerson407
Sequence_nameF01G4.1
Molecular_nameF01G4.1
F01G4.1.1
CE05553
Other_namepsa-4Person_evidenceWBPerson552
CELE_F01G4.1Accession_evidenceNDBBX284604
Public_nameswsn-4
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
211 Feb 2011 15:17:24WBPerson2970Name_changeCGC_nameswsn-4
Other_namepsa-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classswsn
Allele (50)
StrainWBStrain00001167
WBStrain00001676
WBStrain00001677
WBStrain00031323
WBStrain00008467
WBStrain00048602
WBStrain00054726
RNASeq_FPKM (74)
GO_annotation (18)
Contained_in_operonCEOP4412
Ortholog (67)
Paralog (20)
Structured_descriptionConcise_descriptionswsn-4 (phasmid socket absent) gene encodes an ortholog of SWI2/SNF2, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; swsn-4 is probably required during mitosis of the T cells for asymmetric cell division.Paper_evidenceWBPaper00004350
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated01 Aug 2011 00:00:00
Automated_descriptionPredicted to enable ATP-dependent activity, acting on DNA and DNA binding activity. Involved in gonad development. Predicted to be located in nucleus. Expressed in several structures, including head; hyp7 syncytium; tail; ventral cord neurons; and vulval cell. Used to study alcohol use disorder and cancer. Human ortholog(s) of this gene implicated in several diseases, including Coffin-Siris syndrome 4; carcinoma (multiple); and rhabdoid cancer. Is an ortholog of human SMARCA2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2) and SMARCA4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:162Homo sapiensPaper_evidenceWBPaper00060275
Curator_confirmedWBPerson324
Date_last_updated28 Jul 2022 00:00:00
DOID:1574Homo sapiensPaper_evidenceWBPaper00046494
Curator_confirmedWBPerson324
Date_last_updated20 May 2019 00:00:00
Potential_modelDOID:0070046Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11100)
DOID:3908Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11100)
DOID:10283Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11098,HGNC:11100)
DOID:3672Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11100)
DOID:684Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11100)
Models_disease_in_annotationWBDOannot00001297
Models_disease_assertedWBDOannot00000663
Molecular_infoCorresponding_CDSF01G4.1
Corresponding_transcriptF01G4.1.1
Other_sequence (109)
Associated_feature (14)
Transcription_factorWBTranscriptionFactor000378
Experimental_infoRNAi_result (14)
Expr_pattern (12)
Drives_constructWBCnstr00002059
WBCnstr00004205
WBCnstr00009748
WBCnstr00010070
WBCnstr00037928
WBCnstr00038385
Construct_productWBCnstr00010070
WBCnstr00037928
WBCnstr00038385
Microarray_results (21)
Expression_cluster (199)
InteractionWBInteraction000001172
WBInteraction000001174
WBInteraction000009387
WBInteraction000009454
WBInteraction000009460
WBInteraction000009644
WBInteraction000028668
WBInteraction000029431
WBInteraction000029450
WBInteraction000029570
WBInteraction000032771
WBInteraction000032843
WBInteraction000032864
WBInteraction000032865
WBInteraction000032974
WBInteraction000032980
WBInteraction000033024
WBInteraction000033055
WBInteraction000033080
WBInteraction000033112
WBInteraction000033116
WBInteraction000033276
WBInteraction000033280
WBInteraction000033601
WBInteraction000033643
WBInteraction000033645
WBInteraction000033647
WBInteraction000033701
WBInteraction000033831
WBInteraction000033857
WBInteraction000034046
WBInteraction000034105
WBInteraction000034199
WBInteraction000034341
WBInteraction000034585
WBInteraction000034684
WBInteraction000034696
WBInteraction000035042
WBInteraction000035372
WBInteraction000035588
WBInteraction000035992
WBInteraction000036443
WBInteraction000036522
WBInteraction000036694
WBInteraction000037155
WBInteraction000037254
WBInteraction000037255
WBInteraction000037256
WBInteraction000037257
WBInteraction000037258
WBInteraction000037259
WBInteraction000037399
WBInteraction000037596
WBInteraction000037597
WBInteraction000037868
WBInteraction000038113
WBInteraction000038217
WBInteraction000038424
WBInteraction000038477
WBInteraction000038625
WBInteraction000038626
WBInteraction000039090
WBInteraction000039733
WBInteraction000039814
WBInteraction000040611
WBInteraction000041259
WBInteraction000041687
WBInteraction000041689
WBInteraction000041691
WBInteraction000041694
WBInteraction000041696
WBInteraction000041698
WBInteraction000041704
WBInteraction000041706
WBInteraction000042032
WBInteraction000042503
WBInteraction000042504
WBInteraction000042584
WBInteraction000042728
WBInteraction000042740
WBInteraction000042752
WBInteraction000043150
WBInteraction000043214
WBInteraction000043775
WBInteraction000043894
WBInteraction000043915
WBInteraction000044032
WBInteraction000044038
WBInteraction000044044
WBInteraction000044050
WBInteraction000044056
WBInteraction000044062
WBInteraction000044067
WBInteraction000044072
WBInteraction000044080
WBInteraction000044086
WBInteraction000044092
WBInteraction000044097
WBInteraction000044103
WBInteraction000044538
WBInteraction000045159
WBInteraction000045160
WBInteraction000045366
WBInteraction000045378
WBInteraction000045928
WBInteraction000045934
WBInteraction000046016
WBInteraction000046017
WBInteraction000046062
WBInteraction000047515
WBInteraction000047517
WBInteraction000047704
WBInteraction000047924
WBInteraction000048435
WBInteraction000048460
WBInteraction000048495
WBInteraction000048831
WBInteraction000049128
WBInteraction000049708
WBInteraction000050178
WBInteraction000050412
WBInteraction000050464
WBInteraction000103118
WBInteraction000103141
WBInteraction000111883
WBInteraction000113546
WBInteraction000133036
WBInteraction000138613
WBInteraction000139570
WBInteraction000139571
WBInteraction000139572
WBInteraction000139788
WBInteraction000144734
WBInteraction000147313
WBInteraction000148664
WBInteraction000148665
WBInteraction000148666
WBInteraction000148667
WBInteraction000148668
WBInteraction000148669
WBInteraction000148676
WBInteraction000148744
WBInteraction000149032
WBInteraction000152438
WBInteraction000157256
WBInteraction000158090
WBInteraction000158637
WBInteraction000158638
WBInteraction000158639
WBInteraction000158640
WBInteraction000158641
WBInteraction000158642
WBInteraction000158643
WBInteraction000158644
WBInteraction000158645
WBInteraction000158646
WBInteraction000161809
WBInteraction000161843
WBInteraction000162280
WBInteraction000162478
WBInteraction000164209
WBInteraction000164439
WBInteraction000164440
WBInteraction000165765
WBInteraction000166189
WBInteraction000166981
WBInteraction000167475
WBInteraction000167476
WBInteraction000167477
WBInteraction000167478
WBInteraction000167479
WBInteraction000167480
WBInteraction000168581
WBInteraction000169620
WBInteraction000172657
WBInteraction000173695
WBInteraction000173696
WBInteraction000173697
WBInteraction000175747
WBInteraction000182079
WBInteraction000189248
WBInteraction000195754
WBInteraction000195952
WBInteraction000196556
WBInteraction000201500
WBInteraction000203295
WBInteraction000206106
WBInteraction000216662
WBInteraction000220676
WBInteraction000223072
WBInteraction000230305
WBInteraction000233111
WBInteraction000238289
WBInteraction000241800
WBInteraction000241943
WBInteraction000244880
WBInteraction000245586
WBInteraction000245594
WBInteraction000258054
WBInteraction000258055
WBInteraction000258056
WBInteraction000258057
WBInteraction000258058
WBInteraction000258059
WBInteraction000258060
WBInteraction000258061
WBInteraction000258062
WBInteraction000258063
WBInteraction000258064
WBInteraction000258065
WBInteraction000258066
WBInteraction000258067
WBInteraction000258068
WBInteraction000258069
WBInteraction000258981
WBInteraction000261781
WBInteraction000264687
WBInteraction000265722
WBInteraction000267820
WBInteraction000270338
WBInteraction000272860
WBInteraction000273185
WBInteraction000273455
WBInteraction000277534
WBInteraction000277685
WBInteraction000281428
WBInteraction000282447
WBInteraction000284601
WBInteraction000295688
WBInteraction000297008
WBInteraction000297321
WBInteraction000301760
WBInteraction000308113
WBInteraction000310884
WBInteraction000314356
WBInteraction000317619
WBInteraction000320719
WBInteraction000321828
WBInteraction000323165
WBInteraction000323843
WBInteraction000323844
WBInteraction000334635
WBInteraction000334833
WBInteraction000339767
WBInteraction000339768
WBInteraction000342393
WBInteraction000342676
WBInteraction000343247
WBInteraction000343878
WBInteraction000346526
WBInteraction000347486
WBInteraction000350086
WBInteraction000351517
WBInteraction000353772
WBInteraction000354686
WBInteraction000354967
WBInteraction000359492
WBInteraction000362353
WBInteraction000364825
WBInteraction000368279
WBInteraction000369761
WBInteraction000371313
WBInteraction000371384
WBInteraction000375433
WBInteraction000376871
WBInteraction000379681
WBInteraction000380849
WBInteraction000390547
WBInteraction000395724
WBInteraction000400274
WBInteraction000400483
WBInteraction000402140
WBInteraction000403554
WBInteraction000404800
WBInteraction000406681
WBInteraction000409976
WBInteraction000409977
WBInteraction000409978
WBInteraction000412070
WBInteraction000414498
WBInteraction000419181
WBInteraction000419390
WBInteraction000421859
WBInteraction000421860
WBInteraction000421861
WBInteraction000423791
WBInteraction000424548
WBInteraction000425791
WBInteraction000426771
WBInteraction000427652
WBInteraction000431892
WBInteraction000432680
WBInteraction000433168
WBInteraction000436357
WBInteraction000438621
WBInteraction000439507
WBInteraction000441286
WBInteraction000445987
WBInteraction000449254
WBInteraction000454471
WBInteraction000454509
WBInteraction000459604
WBInteraction000460571
WBInteraction000461385
WBInteraction000463997
WBInteraction000463998
WBInteraction000463999
WBInteraction000464000
WBInteraction000464001
WBInteraction000464002
WBInteraction000464003
WBInteraction000464004
WBInteraction000464005
WBInteraction000464006
WBInteraction000464007
WBInteraction000464008
WBInteraction000464009
WBInteraction000464010
WBInteraction000464068
WBInteraction000465984
WBInteraction000466870
WBInteraction000470825
WBInteraction000473746
WBInteraction000473864
WBInteraction000473865
WBInteraction000473894
WBInteraction000539028
WBInteraction000540494
WBInteraction000541864
WBInteraction000541867
WBInteraction000558454
WBInteraction000559171
WBInteraction000561176
WBInteraction000561266
WBInteraction000561555
WBInteraction000565019
WBInteraction000565547
WBInteraction000573513
WBInteraction000574726
WBInteraction000576898
WBInteraction000576899
WBInteraction000576900
WBInteraction000576901
WBInteraction000576902
WBInteraction000576903
WBInteraction000576904
WBInteraction000576905
WBInteraction000576906
WBInteraction000576907
WBInteraction000576908
WBInteraction000576909
WBInteraction000576910
WBInteraction000576911
WBInteraction000576914
WBInteraction000576915
WBInteraction000576916
WBInteraction000576917
WBInteraction000576918
WBInteraction000576919
WBInteraction000576920
WBInteraction000576921
WBInteraction000576922
WBInteraction000576923
WBInteraction000576924
WBInteraction000576925
WBInteraction000576926
WBInteraction000576927
WBInteraction000577461
WBInteraction000586688
Map_infoMapIVPosition4.90728Error0.003105
PositivePositive_cloneF01G4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4526
4609
Pseudo_map_position
Reference (19)
RemarkSequence connection from [Goldstein B], [020620 krb]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene