WormBase Tree Display for Gene: WBGene00004190
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WBGene00004190 | SMap | S_parent | Sequence | T27F6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pars-2 | Person_evidence | WBPerson36 | |||||
WBPerson10953 | |||||||||
Sequence_name | T27F6.5 | ||||||||
Molecular_name (12) | |||||||||
Other_name | prs-2 | ||||||||
CELE_T27F6.5 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | pars-2 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00004190 | |||||
WormFlux | gene | WBGene00004190 | |||||||
NDB | locus_tag | CELE_T27F6.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004190|UniProtKB=O45869 | |||||||
family | PTHR42753 | ||||||||
NCBI | gene | 173117 | |||||||
RefSeq | protein | NM_001047226.3 | |||||||
NM_001047225.3 | |||||||||
NM_001047224.6 | |||||||||
NM_001129053.4 | |||||||||
KEGG | KEGG_id | 6.1.1.15 | |||||||
NemaPath | KEGG_id | 6.1.1.15 | |||||||
TREEFAM | TREEFAM_ID | TF105607 | |||||||
TrEMBL | UniProtAcc | Q1ZXR9 | |||||||
O45869 | |||||||||
Q1ZXS0 | |||||||||
A5JYY0 | |||||||||
UniProt_GCRP | UniProtAcc | O45869 | |||||||
OMIM | gene | 612036 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 29 Jan 2010 14:16:16 | WBPerson2970 | Name_change | CGC_name | pars-2 | ||||
Other_name | prs-2 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pars | ||||||||
Allele (57) | |||||||||
Strain | WBStrain00003363 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (15) | |||||||||
Contained_in_operon | CEOP1668 | ||||||||
Ortholog (42) | |||||||||
Paralog | WBGene00044344 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00004189 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006617 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable proline-tRNA ligase activity. Predicted to be involved in prolyl-tRNA aminoacylation. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 75. Is an ortholog of human PARS2 (prolyl-tRNA synthetase 2, mitochondrial). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0112211 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30563) | ||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00061690 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00036048 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116863 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093113 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054342 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026420 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026421 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004329 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00071066 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093133 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1177 | ||||||||
Expr6796 | |||||||||
Expr1029198 | |||||||||
Expr1032050 | |||||||||
Expr1157888 | |||||||||
Expr2014739 | |||||||||
Expr2032973 | |||||||||
Drives_construct | WBCnstr00003834 | ||||||||
Microarray_results (45) | |||||||||
Expression_cluster (93) | |||||||||
Interaction (60) | |||||||||
Map_info | Map | I | Position | 13.2372 | Error | 0.001975 | |||
Positive | Positive_clone | T27F6 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00049490 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064339 | |||||||||
Remark | Connection made from predicted gene which has synthetase Pfam domain similarity. [sdm 12/01] | ||||||||
dl1 : probably cytoplasmic | |||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |