WormBase Tree Display for Gene: WBGene00004133

WBGene00004133 SMap: S_parent: Sequence: F57B9
  Identity: Version: 2
    Name: CGC_name: abu-13 Paper_evidence: WBPaper00038304
          Person_evidence: WBPerson3
      Sequence_name: F57B9.9
      Molecular_name: F57B9.9
        F57B9.9.1
        CE51336
      Other_name: pqn-46 Person_evidence: WBPerson265
        CELE_F57B9.9 Accession_evidence: NDB BX284603
      Public_name: abu-13
    DB_info: Database: AceView gene 3I32
        WormQTL gene WBGene00004133
        WormFlux gene WBGene00004133
        NDB locus_tag CELE_F57B9.9
        NCBI gene 175970
        RefSeq protein NM_001322632.2
        TrEMBL UniProtAcc Q20936
        UniProt_GCRP UniProtAcc Q20936
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 12 Apr 2011 11:48:32 WBPerson2970 Name_change: CGC_name: abu-13
                Other_name: pqn-46
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: abu
    Allele (50)
    RNASeq_FPKM (74)
    Ortholog: WBGene00036404 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00163140 Caenorhabditis brenneri From_analysis: OMA
            WormBase-Compara
      WBGene00061633 Caenorhabditis remanei From_analysis: OMA
            WormBase-Compara
      WBGene00091911 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00137843 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00224776 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6049 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14810 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1513 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17286 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g317 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20021 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5933 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6197 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g129 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g2995 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00402.g10357 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-abu-13 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14429 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00301.g9001 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_009950 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03759 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g7493 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30249710 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8037 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246392 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00275049 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Concise_description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). Paper_evidence: WBPaper00005068
            WBPaper00012788
            WBPaper00012830
            WBPaper00012882
            WBPaper00012897
            WBPaper00013003
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in arc ant V; hypodermis; mechanosensory neurons; rectal epithelial cell; and somatic gonad precursor based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twenty-seven chemicals including Ethanol; Nitric Oxide; and methylmercury hydroxide based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F57B9.9
    Corresponding_CDS_history: F57B9.9:wp92
      F57B9.9:wp252
    Corresponding_transcript: F57B9.9.1
    Other_sequence (41)
    Associated_feature: WBsf667025
      WBsf667026
      WBsf992906
      WBsf1015175
      WBsf226882
  Experimental_info: RNAi_result: WBRNAi00093382 Inferred_automatically: RNAi_primary
      WBRNAi00093375 Inferred_automatically: RNAi_primary
      WBRNAi00015879 Inferred_automatically: RNAi_primary
      WBRNAi00005308 Inferred_automatically: RNAi_primary
      WBRNAi00048846 Inferred_automatically: RNAi_primary
      WBRNAi00093386 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027048
      Expr1032008
      Expr1152595
      Expr2009106
      Expr2027342
    Drives_construct: WBCnstr00037935
    Construct_product: WBCnstr00037935
    Microarray_results (23)
    Expression_cluster (273)
    Interaction (185)
    WBProcess: WBbiopr:00000079
  Map_info: Map: III Position: -0.875479 Error: 0.000392
    Positive: Positive_clone: F57B9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038304
    WBPaper00062388
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene