WormBase Tree Display for Gene: WBGene00004133
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| WBGene00004133 | SMap | S_parent | Sequence | F57B9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | abu-13 | Paper_evidence | WBPaper00038304 | |||||
| Person_evidence | WBPerson3 | ||||||||
| Sequence_name | F57B9.9 | ||||||||
| Molecular_name | F57B9.9 | ||||||||
| F57B9.9.1 | |||||||||
| CE51336 | |||||||||
| Other_name | pqn-46 | Person_evidence | WBPerson265 | ||||||
| CELE_F57B9.9 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | abu-13 | ||||||||
| DB_info | Database | AceView | gene | 3I32 | |||||
| WormQTL | gene | WBGene00004133 | |||||||
| WormFlux | gene | WBGene00004133 | |||||||
| NDB | locus_tag | CELE_F57B9.9 | |||||||
| NCBI | gene | 175970 | |||||||
| RefSeq | protein | NM_001322632.2 | |||||||
| TrEMBL | UniProtAcc | Q20936 | |||||||
| UniProt_GCRP | UniProtAcc | Q20936 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 12 Apr 2011 11:48:32 | WBPerson2970 | Name_change | CGC_name | abu-13 | ||||
| Other_name | pqn-46 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abu | ||||||||
| Allele (50) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (27) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in arc ant V; hypodermis; mechanosensory neurons; rectal epithelial cell; and somatic gonad precursor based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twenty-seven chemicals including Ethanol; Nitric Oxide; and methylmercury hydroxide based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57B9.9 | |||||||
| Corresponding_CDS_history | F57B9.9:wp92 | ||||||||
| F57B9.9:wp252 | |||||||||
| Corresponding_transcript | F57B9.9.1 | ||||||||
| Other_sequence (41) | |||||||||
| Associated_feature | WBsf667025 | ||||||||
| WBsf667026 | |||||||||
| WBsf992906 | |||||||||
| WBsf1015175 | |||||||||
| WBsf226882 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00093382 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00093375 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015879 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005308 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048846 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093386 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027048 | ||||||||
| Expr1032008 | |||||||||
| Expr1152595 | |||||||||
| Expr2009106 | |||||||||
| Expr2027342 | |||||||||
| Drives_construct | WBCnstr00037935 | ||||||||
| Construct_product | WBCnstr00037935 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (273) | |||||||||
| Interaction (185) | |||||||||
| WBProcess | WBbiopr:00000079 | ||||||||
| Map_info | Map | III | Position | -0.875479 | Error | 0.000392 | |||
| Positive | Positive_clone | F57B9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038304 | ||||||||
| WBPaper00062388 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
