WormBase Tree Display for Gene: WBGene00004127
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| WBGene00004127 | SMap | S_parent | Sequence | F52D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | abu-12 | Paper_evidence | WBPaper00038304 | |||||
| Person_evidence | WBPerson3 | ||||||||
| Sequence_name | F52D1.3 | ||||||||
| Molecular_name | F52D1.3a | ||||||||
| F52D1.3a.1 | |||||||||
| CE37115 | |||||||||
| F52D1.3b | |||||||||
| CE51468 | |||||||||
| F52D1.3c | |||||||||
| CE51512 | |||||||||
| F52D1.3b.1 | |||||||||
| F52D1.3c.1 | |||||||||
| Other_name | pqn-40 | Person_evidence | WBPerson265 | ||||||
| CELE_F52D1.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | abu-12 | ||||||||
| DB_info | Database | AceView | gene | XB70 | |||||
| WormQTL | gene | WBGene00004127 | |||||||
| WormFlux | gene | WBGene00004127 | |||||||
| NDB | locus_tag | CELE_F52D1.3 | |||||||
| NCBI | gene | 180399 | |||||||
| RefSeq | protein | NM_001380891.1 | |||||||
| NM_001380890.1 | |||||||||
| NM_075703.5 | |||||||||
| TrEMBL | UniProtAcc | A0A131MD32 | |||||||
| A0A131MC08 | |||||||||
| O17351 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A131MC08 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 12 Apr 2011 11:48:32 | WBPerson2970 | Name_change | CGC_name | abu-12 | ||||
| Other_name | pqn-40 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abu | ||||||||
| Allele (109) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (24) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in anterior ganglion (ant); head mesodermal cell; hypodermis; interfacial epithelial cell; and mechanosensory neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by twenty-one chemicals including hydrogen sulfide; methylmercury hydroxide; and 1-methylnicotinamide based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F52D1.3a | |||||||
| F52D1.3b | |||||||||
| F52D1.3c | |||||||||
| Corresponding_CDS_history | F52D1.3:wp128 | ||||||||
| Corresponding_transcript | F52D1.3a.1 | ||||||||
| F52D1.3b.1 | |||||||||
| F52D1.3c.1 | |||||||||
| Other_sequence | BF199494.1 | ||||||||
| OVC01468_1 | |||||||||
| JI180037.1 | |||||||||
| JI167408.1 | |||||||||
| SR02925 | |||||||||
| AA618919.1 | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00093376 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00093385 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047960 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015393 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093381 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001824 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024698 | ||||||||
| Expr1032002 | |||||||||
| Expr1151779 | |||||||||
| Expr2009105 | |||||||||
| Expr2027341 | |||||||||
| Drives_construct | WBCnstr00037937 | ||||||||
| Construct_product | WBCnstr00037937 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (231) | |||||||||
| Interaction (153) | |||||||||
| WBProcess | WBbiopr:00000079 | ||||||||
| Map_info | Map | X | Position | -19.8487 | |||||
| Positive | Positive_clone | F52D1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026926 | ||||||||
| WBPaper00038304 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
