WormBase Tree Display for Gene: WBGene00004123
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| WBGene00004123 | SMap | S_parent | Sequence | F39D8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pqn-36 | Person_evidence | WBPerson625 | |||||
| Sequence_name | F39D8.1 | ||||||||
| Molecular_name (24) | |||||||||
| Other_name | CELE_F39D8.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | pqn-36 | ||||||||
| DB_info | Database | AceView | gene | XQ28 | |||||
| WormQTL | gene | WBGene00004123 | |||||||
| WormFlux | gene | WBGene00004123 | |||||||
| NDB | locus_tag | CELE_F39D8.1 | |||||||
| NCBI | gene | 181630 | |||||||
| RefSeq | protein | NM_001364052.5 | |||||||
| NM_001364051.5 | |||||||||
| NM_078145.5 | |||||||||
| NM_001368560.4 | |||||||||
| NM_001364054.4 | |||||||||
| NM_078146.5 | |||||||||
| NM_078144.4 | |||||||||
| NM_001364053.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF321329 | |||||||
| TrEMBL | UniProtAcc | Q8I4J3 | |||||||
| A0A2X0RQ66 | |||||||||
| A0A2X0SX51 | |||||||||
| A0A2X0RCY9 | |||||||||
| Q20189 | |||||||||
| A0A3B1E067 | |||||||||
| A0A2X0REC4 | |||||||||
| Q8I4J4 | |||||||||
| UniProt_GCRP | UniProtAcc | Q8I4J4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (117) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (21) | |||||||||
| Paralog | WBGene00004119 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in ABalappaap; interfacial epithelial cell; neurons; retrovesicular ganglion; and tail hypodermis based on microarray and single-cell RNA-seq studies. Is affected by several genes including skn-1; rrf-3; and eat-2 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including rotenone; metformin; and Rifampin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F39D8.1a | |||||||
| F39D8.1b | |||||||||
| F39D8.1c | |||||||||
| F39D8.1d | |||||||||
| F39D8.1e | |||||||||
| F39D8.1f | |||||||||
| F39D8.1g | |||||||||
| F39D8.1h | |||||||||
| Corresponding_transcript | F39D8.1a.1 | ||||||||
| F39D8.1b.1 | |||||||||
| F39D8.1c.1 | |||||||||
| F39D8.1d.1 | |||||||||
| F39D8.1e.1 | |||||||||
| F39D8.1f.1 | |||||||||
| F39D8.1g.1 | |||||||||
| F39D8.1h.1 | |||||||||
| Associated_feature | WBsf654653 | ||||||||
| WBsf671375 | |||||||||
| WBsf238323 | |||||||||
| WBsf238324 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046769 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091333 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046768 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002393 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014597 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031986 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014168 | ||||||||
| Expr1031999 | |||||||||
| Expr1150643 | |||||||||
| Expr2015049 | |||||||||
| Expr2033284 | |||||||||
| Drives_construct | WBCnstr00035680 | ||||||||
| Construct_product | WBCnstr00035680 | ||||||||
| Microarray_results (37) | |||||||||
| Expression_cluster (198) | |||||||||
| Interaction | WBInteraction000319424 | ||||||||
| WBInteraction000519756 | |||||||||
| Map_info | Map | X | Position | 22.5888 | |||||
| Positive | Positive_clone | F39D8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00064648 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
