WormBase Tree Display for Gene: WBGene00004123
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WBGene00004123 | SMap | S_parent | Sequence | F39D8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pqn-36 | Person_evidence | WBPerson625 | |||||
Sequence_name | F39D8.1 | ||||||||
Molecular_name (24) | |||||||||
Other_name | CELE_F39D8.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | pqn-36 | ||||||||
DB_info | Database | AceView | gene | XQ28 | |||||
WormQTL | gene | WBGene00004123 | |||||||
WormFlux | gene | WBGene00004123 | |||||||
NDB | locus_tag | CELE_F39D8.1 | |||||||
NCBI | gene | 181630 | |||||||
RefSeq | protein | NM_001364052.5 | |||||||
NM_001364051.5 | |||||||||
NM_078145.5 | |||||||||
NM_001368560.4 | |||||||||
NM_001364054.4 | |||||||||
NM_078146.5 | |||||||||
NM_078144.4 | |||||||||
NM_001364053.4 | |||||||||
TREEFAM | TREEFAM_ID | TF321329 | |||||||
TrEMBL | UniProtAcc | Q8I4J3 | |||||||
A0A2X0RQ66 | |||||||||
A0A2X0SX51 | |||||||||
A0A2X0RCY9 | |||||||||
Q20189 | |||||||||
A0A3B1E067 | |||||||||
A0A2X0REC4 | |||||||||
Q8I4J4 | |||||||||
UniProt_GCRP | UniProtAcc | Q8I4J4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pqn | ||||||||
Allele (117) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (21) | |||||||||
Paralog | WBGene00004119 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
WBPaper00012788 | |||||||||
WBPaper00012830 | |||||||||
WBPaper00012882 | |||||||||
WBPaper00012897 | |||||||||
WBPaper00013003 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in ABalappaap; interfacial epithelial cell; neurons; retrovesicular ganglion; and tail hypodermis based on microarray and single-cell RNA-seq studies. Is affected by several genes including skn-1; rrf-3; and eat-2 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including rotenone; metformin; and Rifampin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F39D8.1a | |||||||
F39D8.1b | |||||||||
F39D8.1c | |||||||||
F39D8.1d | |||||||||
F39D8.1e | |||||||||
F39D8.1f | |||||||||
F39D8.1g | |||||||||
F39D8.1h | |||||||||
Corresponding_transcript | F39D8.1a.1 | ||||||||
F39D8.1b.1 | |||||||||
F39D8.1c.1 | |||||||||
F39D8.1d.1 | |||||||||
F39D8.1e.1 | |||||||||
F39D8.1f.1 | |||||||||
F39D8.1g.1 | |||||||||
F39D8.1h.1 | |||||||||
Associated_feature | WBsf654653 | ||||||||
WBsf671375 | |||||||||
WBsf238323 | |||||||||
WBsf238324 | |||||||||
Experimental_info (7) | |||||||||
Map_info | Map | X | Position | 22.5888 | |||||
Positive | Positive_clone | F39D8 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00064648 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |