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WormBase Tree Display for Gene: WBGene00004119

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Name Class

WBGene00004119SMapS_parentSequenceF21C10
IdentityVersion1
NameCGC_namepqn-31Person_evidenceWBPerson625
Sequence_nameF21C10.8
Molecular_nameF21C10.8a
F21C10.8a.1
CE07123
F21C10.8b
CE35283
F21C10.8b.1
Other_nameCELE_F21C10.8Accession_evidenceNDBBX284605
Public_namepqn-31
DB_infoDatabaseAceViewgene5J591
WormQTLgeneWBGene00004119
WormFluxgeneWBGene00004119
NDBlocus_tagCELE_F21C10.8
NCBIgene179291
RefSeqproteinNM_001028658.5
NM_001028659.5
TREEFAMTREEFAM_IDTF321329
TrEMBLUniProtAccQ7JNW7
H2KY72
UniProt_GCRPUniProtAccH2KY72
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpqn
Allele (22)
RNASeq_FPKM (74)
Ortholog (21)
ParalogWBGene00004123Caenorhabditis elegansFrom_analysisTreeFam
Structured_descriptionConcise_descriptionThe protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).Paper_evidenceWBPaper00005068
WBPaper00012788
WBPaper00012830
WBPaper00012882
WBPaper00012897
WBPaper00013003
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in head mesodermal cell and pharynx based on RNA-seq studies. Is affected by several genes including daf-2; glp-1; and dpy-10 based on microarray; RNA-seq; and tiling array studies. Is affected by twenty-one chemicals including Ethanol; methylmercuric chloride; and rotenone based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSF21C10.8a
F21C10.8b
Corresponding_transcriptF21C10.8a.1
F21C10.8b.1
Other_sequence (11)
Associated_featureWBsf1000818
WBsf1000819
WBsf1020133
WBsf232211
Experimental_infoRNAi_resultWBRNAi00045178Inferred_automaticallyRNAi_primary
WBRNAi00031206Inferred_automaticallyRNAi_primary
WBRNAi00013664Inferred_automaticallyRNAi_primary
Expr_patternExpr1020920
Expr1149117
Expr2015046
Expr2033281
Drives_constructWBCnstr00035682
Construct_productWBCnstr00035682
Microarray_results (23)
Expression_cluster (234)
InteractionWBInteraction000303692
WBInteraction000341945
WBInteraction000547861
WBInteraction000547862
WBInteraction000549444
WBInteraction000549454
Map_infoMapVPosition1.9399Error0.002842
PositivePositive_cloneF21C10Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00058665
WBPaper00064648
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene