WormBase Tree Display for Gene: WBGene00004086

WBGene00004086 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: Y49E10
  Identity: Version: 1
    Name: CGC_name: pph-4.2 Person_evidence: WBPerson634
      Sequence_name: Y49E10.3
      Molecular_name: Y49E10.3
        Y49E10.3.1
        CE22221
      Other_name: CELE_Y49E10.3 Accession_evidence: NDB BX284603
      Public_name: pph-4.2
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pph
    Allele (127)
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP3760
    Ortholog (35)
    Paralog: WBGene00002363 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00004085 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00007922 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001747 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001748 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003969 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004083 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006527 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007354 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007699 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007700 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007763 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008124 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00009054 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00009079 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00009101 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00009893 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00009948 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00010265 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00010992 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011133 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011808 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00012008 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00012665 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00012741 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013476 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00014158 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015661 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016010 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016081 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016398 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00017636 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00017817 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018232 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018359 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018410 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019951 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020053 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020187 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020985 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00021113 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022617 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022710 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00044347 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: pph-4.2 encodes a member of the PPP family of protein serine threonine phosphatases and is a homolog of protein phosphatase 4 (PP4); affects larval viability at low penetrance in RNAi screens. Paper_evidence: WBPaper00005225
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human PPP4C (protein phosphatase 4 catalytic subunit). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y49E10.3
    Corresponding_CDS_history: Y49E10.3b:wp279
    Corresponding_transcript: Y49E10.3.1
    Other_sequence (31)
    Associated_feature: WBsf651538
      WBsf994628
      WBsf994629
      WBsf994630
      WBsf1016183
      WBsf1016184
      WBsf1016185
      WBsf1016186
      WBsf227658
      WBsf227659
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr1018638
      Expr1031970
      Expr1160467
      Expr2015013
      Expr2033248
    Drives_construct: WBCnstr00019772
      WBCnstr00019773
      WBCnstr00019774
    Microarray_results (24)
    Expression_cluster (151)
    Interaction (37)
  Map_info: Map: III Position: 17.3583 Error: 0.034655
    Positive: Positive_clone: Y49E10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005225
    WBPaper00011887
    WBPaper00017019
    WBPaper00023689
    WBPaper00026065
    WBPaper00027281
    WBPaper00032438
    WBPaper00038491
    WBPaper00055090
  Remark: Sequence connection from [Sugimoto A]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene