WormBase Tree Display for Gene: WBGene00004086
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| WBGene00004086 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y49E10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pph-4.2 | Person_evidence | WBPerson634 | |||||
| Sequence_name | Y49E10.3 | ||||||||
| Molecular_name | Y49E10.3 | ||||||||
| Y49E10.3.1 | |||||||||
| CE22221 | |||||||||
| Other_name | CELE_Y49E10.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pph-4.2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pph | ||||||||
| Allele (127) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP3760 | ||||||||
| Ortholog (35) | |||||||||
| Paralog (44) | |||||||||
| Structured_description | Concise_description | pph-4.2 encodes a member of the PPP family of protein serine threonine phosphatases and is a homolog of protein phosphatase 4 (PP4); affects larval viability at low penetrance in RNAi screens. | Paper_evidence | WBPaper00005225 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human PPP4C (protein phosphatase 4 catalytic subunit). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y49E10.3 | |||||||
| Corresponding_CDS_history | Y49E10.3b:wp279 | ||||||||
| Corresponding_transcript | Y49E10.3.1 | ||||||||
| Other_sequence (31) | |||||||||
| Associated_feature | WBsf651538 | ||||||||
| WBsf994628 | |||||||||
| WBsf994629 | |||||||||
| WBsf994630 | |||||||||
| WBsf1016183 | |||||||||
| WBsf1016184 | |||||||||
| WBsf1016185 | |||||||||
| WBsf1016186 | |||||||||
| WBsf227658 | |||||||||
| WBsf227659 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1018638 | ||||||||
| Expr1031970 | |||||||||
| Expr1160467 | |||||||||
| Expr2015013 | |||||||||
| Expr2033248 | |||||||||
| Drives_construct | WBCnstr00019772 | ||||||||
| WBCnstr00019773 | |||||||||
| WBCnstr00019774 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (151) | |||||||||
| Interaction (37) | |||||||||
| Map_info | Map | III | Position | 17.3583 | Error | 0.034655 | |||
| Positive | Positive_clone | Y49E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005225 | ||||||||
| WBPaper00011887 | |||||||||
| WBPaper00017019 | |||||||||
| WBPaper00023689 | |||||||||
| WBPaper00026065 | |||||||||
| WBPaper00027281 | |||||||||
| WBPaper00032438 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Sugimoto A] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
