WormBase Tree Display for Gene: WBGene00004086
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WBGene00004086 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y49E10 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pph | ||||||
Allele (127) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (13) | |||||||
Contained_in_operon | CEOP3760 | ||||||
Ortholog (35) | |||||||
Paralog (44) | |||||||
Structured_description | Concise_description | pph-4.2 encodes a member of the PPP family of protein serine threonine phosphatases and is a homolog of protein phosphatase 4 (PP4); affects larval viability at low penetrance in RNAi screens. | Paper_evidence | WBPaper00005225 | |||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human PPP4C (protein phosphatase 4 catalytic subunit). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y49E10.3 | |||||
Corresponding_CDS_history | Y49E10.3b:wp279 | ||||||
Corresponding_transcript | Y49E10.3.1 | ||||||
Other_sequence (31) | |||||||
Associated_feature | WBsf651538 | ||||||
WBsf994628 | |||||||
WBsf994629 | |||||||
WBsf994630 | |||||||
WBsf1016183 | |||||||
WBsf1016184 | |||||||
WBsf1016185 | |||||||
WBsf1016186 | |||||||
WBsf227658 | |||||||
WBsf227659 | |||||||
Experimental_info | RNAi_result (13) | ||||||
Expr_pattern | Expr1018638 | ||||||
Expr1031970 | |||||||
Expr1160467 | |||||||
Expr2015013 | |||||||
Expr2033248 | |||||||
Drives_construct | WBCnstr00019772 | ||||||
WBCnstr00019773 | |||||||
WBCnstr00019774 | |||||||
Microarray_results (24) | |||||||
Expression_cluster (151) | |||||||
Interaction (37) | |||||||
Map_info | Map | III | Position | 17.3583 | Error | 0.034655 | |
Positive | Positive_clone | Y49E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00005225 | ||||||
WBPaper00011887 | |||||||
WBPaper00017019 | |||||||
WBPaper00023689 | |||||||
WBPaper00026065 | |||||||
WBPaper00027281 | |||||||
WBPaper00032438 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Sequence connection from [Sugimoto A] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |