WormBase Tree Display for Gene: WBGene00004058
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| WBGene00004058 | Evidence | Person_evidence | WBPerson583 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson36 | |||||||||
| SMap | S_parent | Sequence | C44B7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pmp-1 | Person_evidence | WBPerson36 | |||||
| Sequence_name | C44B7.8 | ||||||||
| Molecular_name | C44B7.8 | ||||||||
| C44B7.8.1 | |||||||||
| CE02546 | |||||||||
| Other_name | CELE_C44B7.8 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | pmp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pmp | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00031620 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00004059 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004061 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004060 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004062 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pmp-1 encodes an ATP-binding cassette (ABC) transporter most closely related to the peroxisomal membrane proteins; pmp-1 activity is required for efficient RNA interference (RNAi) of a germline-expressed target, pop-1. | Paper_evidence | WBPaper00027644 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and long-chain fatty acid transporter activity. Predicted to be involved in fatty acid catabolic process; long-chain fatty acid import into peroxisome; and peroxisome organization. Predicted to be located in peroxisomal membrane. Human ortholog(s) of this gene implicated in Zellweger syndrome and congenital bile acid synthesis defect 5. Is an ortholog of human ABCD3 (ATP binding cassette subfamily D member 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:905 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:67) | ||||
| DOID:0111066 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:67) | ||||||
| Molecular_info | Corresponding_CDS | C44B7.8 | |||||||
| Corresponding_transcript | C44B7.8.1 | ||||||||
| Other_sequence | GW412065.1 | ||||||||
| PSC01354_1 | |||||||||
| FF678460.1 | |||||||||
| HG08107 | |||||||||
| FF680123.1 | |||||||||
| BXC02039_1 | |||||||||
| JI477427.1 | |||||||||
| Associated_feature | WBsf650193 | ||||||||
| WBsf223246 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00102606 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042433 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103674 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029788 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5495 | ||||||||
| Expr1027941 | |||||||||
| Expr1031956 | |||||||||
| Expr1146422 | |||||||||
| Expr2014972 | |||||||||
| Expr2033207 | |||||||||
| Drives_construct | WBCnstr00002194 | ||||||||
| WBCnstr00035718 | |||||||||
| Construct_product | WBCnstr00035718 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (229) | |||||||||
| Interaction (38) | |||||||||
| Map_info | Map | II | Position | 0.13231 | Error | 0.001303 | |||
| Positive | Positive_clone | C44B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026800 | ||||||||
| WBPaper00026805 | |||||||||
| WBPaper00027644 | |||||||||
| WBPaper00031484 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047097 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061133 | |||||||||
| WBPaper00061938 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
