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WormBase Tree Display for Gene: WBGene00004051

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Name Class

WBGene00004051SMapS_parentSequenceF20C5
IdentityVersion2
NameCGC_nameparg-1Person_evidenceWBPerson236
Sequence_nameF20C5.1
Molecular_name (27)
Other_namepme-3
CELE_F20C5.1Accession_evidenceNDBBX284604
Public_nameparg-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
218 Nov 2014 11:51:19WBPerson2970Name_changeCGC_nameparg-1
Other_namepme-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classparg
Allele (98)
Possibly_affected_byWBVar02157220
StrainWBStrain00003311
WBStrain00035527
RNASeq_FPKM (74)
GO_annotation (24)
OrthologWBGene00068901Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00036378Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00164422Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00190720Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00210009Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00138041Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00223720Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g7877Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g15994Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12498Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g12499Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17748Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g19449Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4000Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4001Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15732Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11130Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g6949Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g8617Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g2952Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16033Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00088.g3981Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g15482Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g23878Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10440Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01539.g21574Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_016034Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_016039Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12030Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_40060400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11152Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00071482Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00075022Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00241020Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00117092Pristionchus pacificusFrom_analysisWormBase-Compara
FB:FBgn0023216Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-070117-757Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-090313-286Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:1094Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:8605Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1347094Mus musculusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:620387Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00004052Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionparg-1 (formerly known as pme-3) encodes a poly(ADP-ribose) glycohydrolase (PARG) orthologous to human PARG (OMIM:603501) and paralogous to PARG-2; PARG-1 exhibits poly(ADP-ribose) glycohydrolase activity in vitro, and is required in vivo for normal resistance to ionizing radiation; PARG-1 is primarily expressed in the nuclei of nerve cells in the head and tail, as well as in the nerve cord and motor neurons; PARG-1 is also expressed in embryos; neuronal expression of PARG-1 may reflect a requirement for PARG in preventing neurodegeneration like that seen in Drosophila.Paper_evidenceWBPaper00028953
WBPaper00029104
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated14 Nov 2014 00:00:00
Automated_descriptionEnables poly(ADP-ribose) glycohydrolase activity. Involved in nucleotide-sugar metabolic process and response to gamma radiation. Located in neuron projection and nucleus. Expressed in tail neurons and ventral cord neurons. Is an ortholog of human BPHL (biphenyl hydrolase like) and PARG (poly(ADP-ribose) glycohydrolase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF20C5.1a
F20C5.1b
F20C5.1c
F20C5.1d
F20C5.1e
F20C5.1f
F20C5.1g
F20C5.1h
F20C5.1i
Corresponding_CDS_historyF20C5.1:wp92
Corresponding_transcriptF20C5.1a.1
F20C5.1b.1
F20C5.1c.1
F20C5.1d.1
F20C5.1e.1
F20C5.1f.1
F20C5.1g.1
F20C5.1h.1
F20C5.1i.1
Other_sequence (12)
Associated_featureWBsf228736
WBsf228737
Experimental_infoRNAi_resultWBRNAi00007757Inferred_automaticallyRNAi_primary
WBRNAi00013604Inferred_automaticallyRNAi_primary
WBRNAi00045086Inferred_automaticallyRNAi_primary
WBRNAi00065515Inferred_automaticallyRNAi_primary
WBRNAi00001869Inferred_automaticallyRNAi_primary
WBRNAi00065516Inferred_automaticallyRNAi_primary
WBRNAi00077896Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_constructWBCnstr00003782
WBCnstr00004938
WBCnstr00037945
Construct_productWBCnstr00037945
Regulate_expr_clusterWBPaper00063924:PARG-1_interacting
AntibodyWBAntibody00002939
Microarray_results (34)
Expression_cluster (123)
Interaction (13)
Map_infoMapIVPosition3.95897Error0.000944
PositivePositive_cloneF20C5Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4465
4592
Pseudo_map_position
Reference (14)
RemarkGene name created from parsing 'genotype' field from CGC strain information [krb 020721]
Sequence connection from [Moerman DC], [krb 020722]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene