WormBase Tree Display for Gene: WBGene00004041
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| WBGene00004041 | SMap | S_parent | Sequence | F44E2 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | ||||||||
| Name | CGC_name | plg-1 | Person_evidence | WBPerson261 | ||||||
| Sequence_name | F44E2.11 | |||||||||
| Molecular_name | F44E2.11 | |||||||||
| F44E2.11.1 | ||||||||||
| CE45977 | ||||||||||
| Other_name | CELE_F44E2.11 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | plg-1 | |||||||||
| DB_info | Database | NDB | locus_tag | CELE_F44E2.11 | ||||||
| NCBI | gene | 13190610 | ||||||||
| RefSeq | protein | NM_001377577.1 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 09 Mar 2015 14:07:54 | WBPerson2970 | Event | Merged_into | WBGene00206463 | |||||
| Name_change | Sequence_name | F44E2.11 | ||||||||
| 3 | 30 Apr 2015 13:41:48 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| 4 | 30 Apr 2015 13:41:57 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| 5 | 21 Oct 2019 15:23:37 | WBPerson4025 | Event | Changed_class | Pseudogene | CDS | ||||
| Acquires_merge | WBGene00206463 | |||||||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0001217 | ||||||||
| Gene_class | plg | |||||||||
| Reference_allele | WBVar00144470 | |||||||||
| Allele (37) | ||||||||||
| Legacy_information | e2001dm spo : males lay down gelatinous blob over vulva of mated hermaphrodites; allele isolated from natural C. elegans strain Cal-5. ES1 ME3. NA1. | |||||||||
| See also e2001 | ||||||||||
| [C.elegansII] e2001dm,spo : males lay down gelatinous blob over vulva of mated hermaphrodites; allele isolated from natural C. elegans strain from Stanford, CA. ES1 ME3. NA1. [Barker 1994; CB] | ||||||||||
| Strain | WBStrain00004513 | |||||||||
| WBStrain00004630 | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog (17) | ||||||||||
| Structured_description | Concise_description | plg-1 is defined by a single, autosomal dominant mutation that results in formation of a gelatinous copulatory plug over the vulva by males after mating; analysis of natural isolates of C. elegans indicates that formation of a copulatory plug does not occur in the standard laboratory strain, N2, but does occur in other isolates; in N2, the plg-1 gene, which can encode a protein with similarity to mucin glycoproteins, is disrupted by a gypsy/Ty3 type retrotransposon, Cer1; a stable plg-1 transcript is absent in non-plugging strains such as N2, but a spliced transcript from the gene is present in RNA from adult males of plugging strains; the conserved 5' region of plg-1, when fused to a GFP reporter, directs expression exclusively in males in 12 cells of the vas deferens at the L4 stage prior to the adult molt. | Paper_evidence | WBPaper00002770 | ||||||
| WBPaper00032027 | ||||||||||
| Curator_confirmed | WBPerson1843 | |||||||||
| Date_last_updated | 22 Apr 2012 00:00:00 | |||||||||
| Automated_description | Expressed in vas deferens and in male. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS | F44E2.11 | ||||||||
| Corresponding_transcript | F44E2.11.1 | |||||||||
| Corresponding_pseudogene_history | F44E2.11:wp274 | |||||||||
| Experimental_info | Expr_pattern | Expr8206 | ||||||||
| Expr1151140 | ||||||||||
| Marker121 | ||||||||||
| Drives_construct | WBCnstr00001908 | |||||||||
| WBCnstr00005000 | ||||||||||
| Construct_product | WBCnstr00005000 | |||||||||
| Microarray_results | 174709_at | |||||||||
| A_12_P135965 | ||||||||||
| A_12_P136600 | ||||||||||
| GPL19516_CGZ0011412 | ||||||||||
| GPL19516_CGZ0021615 | ||||||||||
| GPL21109_F44E2.11 | ||||||||||
| Expression_cluster (73) | ||||||||||
| WBProcess | WBbiopr:00000012 | |||||||||
| Map_info | Map | III | Position | -0.044 | ||||||
| Positive | Positive_clone | F44E2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | 2_point | 1611 | ||||||||
| Multi_point | 864 | |||||||||
| 2035 | ||||||||||
| Reference (20) | ||||||||||
| Remark | [140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | |||||||||
| [191219 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-0.04083) | ||||||||||
| Method | Gene |
