WormBase Tree Display for Gene: WBGene00004035
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WBGene00004035 | SMap | S_parent | Sequence | Y73F8A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pkd-2 | Person_evidence | WBPerson625 | |||||
Sequence_name | Y73F8A.1 | ||||||||
Molecular_name | Y73F8A.1 | ||||||||
Y73F8A.1.1 | |||||||||
CE38663 | |||||||||
Other_name | pdk-2 | ||||||||
CELE_Y73F8A.1 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | pkd-2 | ||||||||
DB_info | Database | AceView | gene | 4P994 | |||||
WormQTL | gene | WBGene00004035 | |||||||
WormFlux | gene | WBGene00004035 | |||||||
OMIM | disease | 613095 | |||||||
gene | 173910 | ||||||||
NDB | locus_tag | CELE_Y73F8A.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004035|UniProtKB=Q9U1S7 | |||||||
family | PTHR10877 | ||||||||
NCBI | gene | 178424 | |||||||
RefSeq | protein | NM_070437.5 | |||||||
SwissProt | UniProtAcc | Q9U1S7 | |||||||
UniProt_GCRP | UniProtAcc | Q9U1S7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pkd | ||||||||
Allele (134) | |||||||||
Strain | WBStrain00026468 | ||||||||
WBStrain00030885 | |||||||||
WBStrain00031062 | |||||||||
WBStrain00031013 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (66) | |||||||||
Ortholog (57) | |||||||||
Paralog | WBGene00003058 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00016889 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | pkd-2 encodes a TRPP cation channel orthologous to human PKD2; pkd-2 is required for two aspects of male mating behavior: response to hermaphrodite contact and vulva location and acts with lov-1; PKD-2 is expressed in the cilia of three types of male-specific sensory neurons; EGL-44 and EGL-46 regulate cell-specific expression of lov-1 and pkd-2 to specify the behavioral function of the HOB neuron. | Paper_evidence | WBPaper00003680 | |||||
WBPaper00004854 | |||||||||
WBPaper00006247 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 12 Aug 2011 00:00:00 | ||||||||
Automated_description | Enables calcium channel activity. Involved in calcium ion transport; response to hermaphrodite contact; and vulval location. Located in several cellular components, including neuronal cell body; perinuclear region of cytoplasm; and plasma membrane bounded cell projection. Expressed in CEM; nerve ring; neurons; and ray. Used to study autosomal dominant polycystic kidney disease. Human ortholog(s) of this gene implicated in intracranial aneurysm; polycystic kidney disease 2; and retinal degeneration. Is an ortholog of human PKD2 (polycystin 2, transient receptor potential cation channel) and PKD2L1 (polycystin 2 like 1, transient receptor potential cation channel). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:898 | Homo sapiens | Paper_evidence | WBPaper00003680 | ||||
WBPaper00004854 | |||||||||
Accession_evidence | OMIM | 613095 | |||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 30 Apr 2018 00:00:00 | ||||||||
Potential_model | DOID:0080322 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9009) | |||||
DOID:898 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9009) | ||||||
DOID:0110859 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9009) | ||||||
DOID:10941 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9009) | ||||||
DOID:8466 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9009) | ||||||
Disease_relevance | lov-1 and pkd-2 encode the orthologs of human Polycystin-1 and Polycystin-2, which are mutated in autosomal dominant polycystic kidney disease; the polycystins regulate signaling involved in normal renal tubular structure and function; studies in the worm C. elegans have contributed extensively to the finding that cystic kidney diseases can be considered ciliopathies; in elegans lov-1 and pkd-2 are expressed in male ciliary neurons, are required for normal male mating behavior, do not seem to be required for ciliogenesis, and each polycystin may actually have a potential inhibitory function on the other for ciliary function; lov-1 and pkd-1 interact with a single-pass transmembrane protein, CWP-5, though the significance of this interaction for polycystic kidney disease is unknown. | Homo sapiens | Paper_evidence | WBPaper00038373 | |||||
Accession_evidence | OMIM | 613095 | |||||||
173910 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 24 Jan 2012 00:00:00 | ||||||||
Models_disease_in_annotation | WBDOannot00000033 | ||||||||
Models_disease_asserted | WBDOannot00000514 | ||||||||
Molecular_info | Corresponding_CDS | Y73F8A.1 | |||||||
Corresponding_CDS_history | Y73F8A.1:wp90 | ||||||||
Y73F8A.1:wp143 | |||||||||
Corresponding_transcript | Y73F8A.1.1 | ||||||||
Other_sequence | CRC10242_1 | ||||||||
CR05211 | |||||||||
FK801188.1 | |||||||||
JI174536.1 | |||||||||
Associated_feature | WBsf998698 | ||||||||
WBsf998699 | |||||||||
WBsf1018743 | |||||||||
WBsf1018744 | |||||||||
WBsf1018745 | |||||||||
WBsf1018746 | |||||||||
WBsf231243 | |||||||||
Experimental_info | RNAi_result | WBRNAi00066584 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00000585 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021407 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021408 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058373 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112685 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037811 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (17) | |||||||||
Drives_construct (54) | |||||||||
Construct_product (11) | |||||||||
Antibody | WBAntibody00000407 | ||||||||
WBAntibody00002558 | |||||||||
WBAntibody00002633 | |||||||||
Microarray_results (22) | |||||||||
Expression_cluster | WBPaper00037950:intestine_L2-larva_expressed | ||||||||
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq | |||||||||
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray | |||||||||
WBPaper00042215:wdr-23(tm1817)_upregulated | |||||||||
WBPaper00044743:wdr-23_neuron_upregulated | |||||||||
WBPaper00045774:clk-1_downregulated | |||||||||
WBPaper00046805:csr-1(RNAi)_upregulated_Set1 | |||||||||
WBPaper00048923:Aging_regulated | |||||||||
WBPaper00048988:neuron_expressed | |||||||||
WBPaper00049001:EVN_enriched | |||||||||
WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1 | |||||||||
WBPaper00050231:male_enriched | |||||||||
WBPaper00050370:dpy-21(e428)_L3_upregulated | |||||||||
WBPaper00050514:CEBP-1_interacting | |||||||||
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult | |||||||||
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult | |||||||||
WBPaper00053295:lin-22(icb38)_upregulated | |||||||||
WBPaper00053402:cco-1(RNAi)_upregulated | |||||||||
WBPaper00053402:his-3(RNAi)_upregulated | |||||||||
WBPaper00054758:alg-1(gk204)_upregulated | |||||||||
WBPaper00055013:hmg-3(bar24)_upregulated | |||||||||
WBPaper00055354:eat-2(ad1116)_downregulated | |||||||||
WBPaper00055354:Psora-Allantoin_upregulated | |||||||||
WBPaper00055354:Rapamycin-Allantoin_upregulated | |||||||||
WBPaper00055354:Rapamycin-Psora_upregulated | |||||||||
WBPaper00055386:daf-2(e1370)_downregulated | |||||||||
WBPaper00055648:male-CEM-neurons_expressed | |||||||||
WBPaper00055648:male-tail_expressed | |||||||||
WBPaper00055971:nhl-2(ok818)_25C_downregulated | |||||||||
WBPaper00056161:male_enriched_siRNA | |||||||||
WBPaper00056169:rrf-3(pk1426)_upregulated_L4 | |||||||||
WBPaper00056443:sek-1(km4)_upregulated | |||||||||
WBPaper00056868:P.aeruginosa_upregulated_smallRNA | |||||||||
WBPaper00057068:ints-4(RNAi)_upregulated | |||||||||
WBPaper00060014:set-2(zr2012)_upregulated | |||||||||
WBPaper00060445:nfki-1(cer1)_downregulated_L4 | |||||||||
WBPaper00060921:tbh-1(ok1196)_downregulated | |||||||||
WBPaper00061040:eat-2(ad1116)_upregulated | |||||||||
WBPaper00061340:ADA_ADE_grandparent | |||||||||
WBPaper00061340:ALM_BDU | |||||||||
WBPaper00061340:Neuroblast_ALM_BDU | |||||||||
WBPaper00061439:unc-30(ok613)_upregulated | |||||||||
WBPaper00061479:hda-1(ne4752)_upregulated | |||||||||
WBPaper00061527:ckr-1-T09B9.3 | |||||||||
WBPaper00061753:csr-1(tor159)_downregulated_20C | |||||||||
WBPaper00061753:csr-1(tor159)_downregulated_25C | |||||||||
WBPaper00061902:camt-1(ok515)_regulated_RMG | |||||||||
WBPaper00062325:muscle_depleted_coding-RNA | |||||||||
WBPaper00062491:sma-3(wk30)_downregulated | |||||||||
WBPaper00062498:PPM-1.D_interacting | |||||||||
WBPaper00062669:extracellular-vesicle_protein | |||||||||
WBPaper00064315:mes-3(bn199)_upregulated_EGCs | |||||||||
WBPaper00064315:mes-4(bn73)_upregulated_EGCs | |||||||||
WBPaper00064637:cox-5B(RNAi)_upregulated | |||||||||
WBPaper00065746:eat-2(ad1113)_upregulated | |||||||||
cgc4489_group_14 | |||||||||
WBPaper00030985:Enterococcus_faecalis_upregulated | |||||||||
WBPaper00034739:N2moreDR1350 | |||||||||
WBPaper00036286:Pattern_H | |||||||||
WBPaper00040858:eQTL_regulated_reproductive | |||||||||
WBPaper00041939:control_vs_UVC-exposed_24h | |||||||||
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_24h | |||||||||
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated | |||||||||
WBPaper00048637:lin-35(n745)_starvation_downregulated | |||||||||
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO | |||||||||
[cgc6390]:male_soma-enriched | |||||||||
Interaction (66) | |||||||||
WBProcess | WBbiopr:00000012 | ||||||||
Map_info | Map | IV | Position | 13.0445 | |||||
Positive | Positive_clone | Y73F8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4982 | |||||||
Pseudo_map_position | |||||||||
Reference (156) | |||||||||
Remark | The use of the name pdk-2 for this gene was due to a typo in the original paper [krb 020128] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
[140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | |||||||||
Method | Gene |