WormBase Tree Display for Gene: WBGene00004027
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| WBGene00004027 | SMap | S_parent | Sequence | Y49E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pie-1 | Person_evidence | WBPerson498 | |||||
| Sequence_name | Y49E10.14 | ||||||||
| Molecular_name | Y49E10.14a | ||||||||
| Y49E10.14a.1 | |||||||||
| CE28134 | |||||||||
| Y49E10.14b | |||||||||
| CE45773 | |||||||||
| Y49E10.14b.1 | |||||||||
| Other_name | pic-1 | ||||||||
| CELE_Y49E10.14 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | pie-1 | ||||||||
| DB_info | Database | AceView | gene | 3N517 | |||||
| WormQTL | gene | WBGene00004027 | |||||||
| WormFlux | gene | WBGene00004027 | |||||||
| NDB | locus_tag | CELE_Y49E10.14 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004027|UniProtKB=Q94131 | |||||||
| family | PTHR12547 | ||||||||
| NCBI | gene | 176667 | |||||||
| RefSeq | protein | NM_001268238.3 | |||||||
| NM_001268237.2 | |||||||||
| SwissProt | UniProtAcc | Q94131 | |||||||
| TREEFAM | TREEFAM_ID | TF318914 | |||||||
| UniProt_GCRP | UniProtAcc | Q94131 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pie | ||||||||
| Allele (78) | |||||||||
| Legacy_information | [C.elegansII] zu154 : maternal effect lethal, often with two distinct pharynges; additional pharynx and intestinal tissue from P2 (transformed to EMS fate).OA1. Cloned: encodes zinc finger protein, localized to nuclei of germ line blastomeres. [Mello et al. 1992; Mango et al. 1994; EU; JJ] | ||||||||
| Strain (76) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (33) | |||||||||
| Ortholog (26) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | pie-1 encodes a C-x8-C-x5-C-x3-H-type zinc-finger protein; maternally provided PIE-1 is essential for germline cell fate determination, as it functions as a repressor of RNA polymerase II-dependent gene expression in the developing germ line; PIE-1 localization, initially uniform and then concentrated in the posterior germ cell lineages, is regulated by other maternally supplied gene products including PAR-1, MEX-5, and MEX-6. | Paper_evidence | WBPaper00004304 | |||||
| WBPaper00004631 | |||||||||
| WBPaper00005297 | |||||||||
| WBPaper00005347 | |||||||||
| WBPaper00005605 | |||||||||
| WBPaper00005735 | |||||||||
| WBPaper00005791 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 30 Nov 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA 3'-UTR binding activity. Involved in several processes, including embryonic pattern specification; formation of primary germ layer; and negative regulation of nitrogen compound metabolic process. Located in several cellular components, including P granule; centrosome; and cytosol. Expressed in germ line; head muscle; and nerve ring. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y49E10.14a | |||||||
| Y49E10.14b | |||||||||
| Corresponding_CDS_history | Y49E10.14:wp52 | ||||||||
| Corresponding_transcript | Y49E10.14a.1 | ||||||||
| Y49E10.14b.1 | |||||||||
| Other_sequence | U62896 | ||||||||
| CBC08706_1 | |||||||||
| CRC03076_1 | |||||||||
| Associated_feature | WBsf047506 | ||||||||
| WBsf645660 | |||||||||
| WBsf659608 | |||||||||
| WBsf976032 | |||||||||
| WBsf976033 | |||||||||
| WBsf976034 | |||||||||
| WBsf978688 | |||||||||
| WBsf994644 | |||||||||
| WBsf225904 | |||||||||
| Transcription_factor | WBTranscriptionFactor000460 | ||||||||
| Experimental_info | RNAi_result (65) | ||||||||
| Expr_pattern (17) | |||||||||
| Drives_construct (720) | |||||||||
| Construct_product (18) | |||||||||
| Regulate_expr_cluster | WBPaper00061478:pie-1(ne4303)_upregulated | ||||||||
| WBPaper00061478:pie-1(ne4433)_upregulated | |||||||||
| Antibody | WBAntibody00000118 | ||||||||
| WBAntibody00000189 | |||||||||
| WBAntibody00000697 | |||||||||
| WBAntibody00001076 | |||||||||
| WBAntibody00001395 | |||||||||
| WBAntibody00001588 | |||||||||
| WBAntibody00001589 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (152) | |||||||||
| Interaction (309) | |||||||||
| WBProcess | WBbiopr:00000017 | ||||||||
| Map_info | Map | III | Position | 17.7453 | Error | 0.045821 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | ctDf3 | |||||||
| Positive_clone | pJP604 | ||||||||
| Y49E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | Multi_point (11) | ||||||||
| Pos_neg_data | 8413 | ||||||||
| 8414 | |||||||||
| 8548 | |||||||||
| 8557 | |||||||||
| Landmark_gene | |||||||||
| Reference (314) | |||||||||
| Method | Gene |
