WormBase Tree Display for Gene: WBGene00003990
expand all nodes | collapse all nodes | view schema
| WBGene00003990 | Evidence | Person_evidence | WBPerson463 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F35C8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pfn-2 | Person_evidence | WBPerson75 | |||||
| Sequence_name | F35C8.6 | ||||||||
| Molecular_name | F35C8.6 | ||||||||
| F35C8.6.1 | |||||||||
| CE39098 | |||||||||
| Other_name | CELE_F35C8.6 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | pfn-2 | ||||||||
| DB_info | Database | AceView | gene | XF972 | |||||
| WormQTL | gene | WBGene00003990 | |||||||
| WormFlux | gene | WBGene00003990 | |||||||
| NDB | locus_tag | CELE_F35C8.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003990|UniProtKB=Q20025 | |||||||
| family | PTHR11604 | ||||||||
| NCBI | gene | 180808 | |||||||
| RefSeq | protein | NM_076509.7 | |||||||
| SwissProt | UniProtAcc | Q20025 | |||||||
| TREEFAM | TREEFAM_ID | TF300134 | |||||||
| UniProt_GCRP | UniProtAcc | Q20025 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pfn | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00001781 | ||||||||
| WBStrain00031432 | |||||||||
| WBStrain00034783 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00066859 | ||||||||
| 00066860 | |||||||||
| 00066861 | |||||||||
| 00066862 | |||||||||
| 00066863 | |||||||||
| 00066864 | |||||||||
| 00066865 | |||||||||
| 00066866 | |||||||||
| 00112117 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00003989 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003991 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable actin monomer binding activity. Involved in muscle thin filament assembly. Predicted to be located in cell cortex. Expressed in pharynx and spermatheca. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F35C8.6 | |||||||
| Corresponding_CDS_history | F35C8.6:wp148 | ||||||||
| Corresponding_transcript | F35C8.6.1 | ||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf653973 | ||||||||
| WBsf655660 | |||||||||
| WBsf982169 | |||||||||
| WBsf1005243 | |||||||||
| WBsf1005244 | |||||||||
| WBsf1022939 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014311 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022830 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098006 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098007 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046313 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065249 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080815 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098008 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031766 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090684 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3808 | ||||||||
| Expr3810 | |||||||||
| Expr5951 | |||||||||
| Expr1017939 | |||||||||
| Expr1031906 | |||||||||
| Expr1150201 | |||||||||
| Expr1200230 | |||||||||
| Expr2014852 | |||||||||
| Expr2033087 | |||||||||
| Drives_construct | WBCnstr00002594 | ||||||||
| WBCnstr00011670 | |||||||||
| WBCnstr00035760 | |||||||||
| Construct_product | WBCnstr00035760 | ||||||||
| Antibody | WBAntibody00001033 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (170) | |||||||||
| Interaction | WBInteraction000292439 | ||||||||
| WBInteraction000413841 | |||||||||
| WBInteraction000521744 | |||||||||
| WBInteraction000551423 | |||||||||
| WBInteraction000565977 | |||||||||
| WBInteraction000576035 | |||||||||
| WBInteraction000577677 | |||||||||
| WBInteraction000580238 | |||||||||
| Map_info | Map | X | Position | -5.55565 | Error | 0.033757 | |||
| Positive | Positive_clone | F35C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4780 | |||||||
| 4449 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024757 | ||||||||
| WBPaper00026958 | |||||||||
| WBPaper00032338 | |||||||||
| WBPaper00033162 | |||||||||
| WBPaper00049828 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
