WormBase Tree Display for Gene: WBGene00003990
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WBGene00003990 | Evidence | Person_evidence | WBPerson463 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F35C8 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | pfn-2 | Person_evidence | WBPerson75 | |||||
Sequence_name | F35C8.6 | ||||||||
Molecular_name | F35C8.6 | ||||||||
F35C8.6.1 | |||||||||
CE39098 | |||||||||
Other_name | CELE_F35C8.6 | Accession_evidence | NDB | BX284606 | |||||
Public_name | pfn-2 | ||||||||
DB_info | Database | AceView | gene | XF972 | |||||
WormQTL | gene | WBGene00003990 | |||||||
WormFlux | gene | WBGene00003990 | |||||||
NDB | locus_tag | CELE_F35C8.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003990|UniProtKB=Q20025 | |||||||
family | PTHR11604 | ||||||||
NCBI | gene | 180808 | |||||||
RefSeq | protein | NM_076509.7 | |||||||
SwissProt | UniProtAcc | Q20025 | |||||||
TREEFAM | TREEFAM_ID | TF300134 | |||||||
UniProt_GCRP | UniProtAcc | Q20025 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pfn | ||||||||
Allele (34) | |||||||||
Strain | WBStrain00001781 | ||||||||
WBStrain00031432 | |||||||||
WBStrain00034783 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00066859 | ||||||||
00066860 | |||||||||
00066861 | |||||||||
00066862 | |||||||||
00066863 | |||||||||
00066864 | |||||||||
00066865 | |||||||||
00066866 | |||||||||
00112117 | |||||||||
Ortholog (29) | |||||||||
Paralog | WBGene00003989 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003991 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable actin monomer binding activity. Involved in muscle thin filament assembly. Predicted to be located in cell cortex. Expressed in pharynx and spermatheca. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F35C8.6 | |||||||
Corresponding_CDS_history | F35C8.6:wp148 | ||||||||
Corresponding_transcript | F35C8.6.1 | ||||||||
Other_sequence (35) | |||||||||
Associated_feature (6) | |||||||||
Experimental_info | RNAi_result | WBRNAi00014311 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022830 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098006 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098007 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046313 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00065249 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00080815 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098008 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031766 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090684 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3808 | ||||||||
Expr3810 | |||||||||
Expr5951 | |||||||||
Expr1017939 | |||||||||
Expr1031906 | |||||||||
Expr1150201 | |||||||||
Expr1200230 | |||||||||
Expr2014852 | |||||||||
Expr2033087 | |||||||||
Drives_construct | WBCnstr00002594 | ||||||||
WBCnstr00011670 | |||||||||
WBCnstr00035760 | |||||||||
Construct_product | WBCnstr00035760 | ||||||||
Antibody | WBAntibody00001033 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (170) | |||||||||
Interaction | WBInteraction000292439 | ||||||||
WBInteraction000413841 | |||||||||
WBInteraction000521744 | |||||||||
WBInteraction000551423 | |||||||||
WBInteraction000565977 | |||||||||
WBInteraction000576035 | |||||||||
WBInteraction000577677 | |||||||||
WBInteraction000580238 | |||||||||
Map_info | Map | X | Position | -5.55565 | Error | 0.033757 | |||
Positive | Positive_clone | F35C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4780 | |||||||
4449 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00024757 | ||||||||
WBPaper00026958 | |||||||||
WBPaper00032338 | |||||||||
WBPaper00033162 | |||||||||
WBPaper00049828 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |