WormBase Tree Display for Gene: WBGene00003928
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| WBGene00003928 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK945 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | pas-7 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | ZK945.2 | ||||||||
| Molecular_name | ZK945.2 | ||||||||
| ZK945.2.1 | |||||||||
| CE36420 | |||||||||
| Other_name | CELE_ZK945.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | pas-7 | ||||||||
| DB_info | Database | AceView | gene | 2K388 | |||||
| WormQTL | gene | WBGene00003928 | |||||||
| WormFlux | gene | WBGene00003928 | |||||||
| NDB | locus_tag | CELE_ZK945.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003928|UniProtKB=Q09583 | |||||||
| family | PTHR11599 | ||||||||
| NCBI | gene | 174571 | |||||||
| RefSeq | protein | NM_063776.6 | |||||||
| SwissProt | UniProtAcc | Q09583 | |||||||
| TREEFAM | TREEFAM_ID | TF106208 | |||||||
| UniProt_GCRP | UniProtAcc | Q09583 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pas | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00037538 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (37) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | pas-7 encodes a proteasome alpha-type three subunit of the core 20S proteasome subcomplex; loss of pas-7 activity via RNAi results in several defects including embryonic and larval lethality, sterility, and abnormal meiotic progression. | Paper_evidence | WBPaper00005553 | |||||
| WBPaper00024497 | |||||||||
| WBPaper00024925 | |||||||||
| WBPaper00025054 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 Jan 2008 00:00:00 | ||||||||
| Automated_description | Enables identical protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Located in cytoplasm and nucleus. Is an ortholog of human PSMA3 (proteasome 20S subunit alpha 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK945.2 | |||||||
| Corresponding_transcript | ZK945.2.1 | ||||||||
| Other_sequence (82) | |||||||||
| Associated_feature | WBsf650482 | ||||||||
| WBsf223750 | |||||||||
| WBsf223751 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr1027737 | ||||||||
| Expr1031861 | |||||||||
| Expr1163275 | |||||||||
| Expr2014746 | |||||||||
| Expr2032980 | |||||||||
| Drives_construct | WBCnstr00035790 | ||||||||
| Construct_product | WBCnstr00035790 | ||||||||
| Antibody | WBAntibody00002181 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (166) | |||||||||
| Interaction (188) | |||||||||
| Map_info | Map | II | Position | 1.8894 | Error | 0.003611 | |||
| Positive | Positive_clone | ZK945 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
