WormBase Tree Display for Gene: WBGene00003925
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WBGene00003925 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C36B1 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | pas-4 | Person_evidence | WBPerson1551 | |||||
Sequence_name | C36B1.4 | ||||||||
Molecular_name | C36B1.4 | ||||||||
C36B1.4.1 | |||||||||
CE05371 | |||||||||
Other_name | CELE_C36B1.4 | Accession_evidence | NDB | BX284601 | |||||
Public_name | pas-4 | ||||||||
DB_info | Database | AceView | gene | 1J304 | |||||
WormQTL | gene | WBGene00003925 | |||||||
WormFlux | gene | WBGene00003925 | |||||||
NDB | locus_tag | CELE_C36B1.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003925|UniProtKB=Q95005 | |||||||
family | PTHR11599 | ||||||||
NCBI | gene | 172679 | |||||||
RefSeq | protein | NM_059959.7 | |||||||
SwissProt | UniProtAcc | Q95005 | |||||||
TREEFAM | TREEFAM_ID | TF106212 | |||||||
UniProt_GCRP | UniProtAcc | Q95005 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pas | ||||||||
Allele (17) | |||||||||
Strain | WBStrain00002987 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Ortholog (43) | |||||||||
Paralog (13) | |||||||||
Structured_description | Concise_description | pas-4 encodes a proteasome alpha-type seven subunit of the core 20S proteasome subcomplex; loss of pas-4 activity via RNAi results in a wide variety of defects including embryonic and larval lethality, sterility, abnormal locomotion, slow growth, and abnormal transgene expression and subcellular localization; loss of pas-4 activity also results in activation of SKN-1, a transcription factor required in adult worms for the acute response to oxidative stress and maternally for embryonic development. | Paper_evidence | WBPaper00004402 | |||||
WBPaper00006395 | |||||||||
WBPaper00006510 | |||||||||
WBPaper00024497 | |||||||||
WBPaper00025054 | |||||||||
WBPaper00028383 | |||||||||
WBPaper00030965 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 18 Jan 2008 00:00:00 | ||||||||
Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Expressed in tail. Is an ortholog of human PSMA7 (proteasome 20S subunit alpha 7) and PSMA8 (proteasome 20S subunit alpha 8). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C36B1.4 | |||||||
Corresponding_transcript | C36B1.4.1 | ||||||||
Other_sequence (94) | |||||||||
Associated_feature | WBsf649413 | ||||||||
WBsf984491 | |||||||||
WBsf1010268 | |||||||||
WBsf219969 | |||||||||
WBsf219970 | |||||||||
Experimental_info | RNAi_result (25) | ||||||||
Expr_pattern | Chronogram1931 | ||||||||
Chronogram1944 | |||||||||
Expr5441 | |||||||||
Expr1010437 | |||||||||
Expr1031858 | |||||||||
Expr1146036 | |||||||||
Expr2014743 | |||||||||
Expr2032977 | |||||||||
Drives_construct | WBCnstr00003489 | ||||||||
WBCnstr00035793 | |||||||||
Construct_product | WBCnstr00035793 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (168) | |||||||||
Interaction (360) | |||||||||
Map_info | Map | I | Position | 3.03696 | Error | 0.000521 | |||
Positive | Positive_clone | C36B1 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |