WormBase Tree Display for Gene: WBGene00003876
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WBGene00003876 | SMap | S_parent | Sequence | C06G8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pept-2 | Person_evidence | WBPerson2603 | |||||
WBPerson861 | |||||||||
Sequence_name | C06G8.2 | ||||||||
Molecular_name | C06G8.2 | ||||||||
C06G8.2.1 | |||||||||
CE28887 | |||||||||
Other_name | pep-1 | ||||||||
CPTA | Accession_evidence | EMBL | AF000417 | ||||||
opt-1 | |||||||||
CELE_C06G8.2 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | pept-2 | ||||||||
DB_info | Database | AceView | gene | 4L557 | |||||
WormQTL | gene | WBGene00003876 | |||||||
WormFlux | gene | WBGene00003876 | |||||||
NDB | locus_tag | CELE_C06G8.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003876|UniProtKB=Q17758 | |||||||
family | PTHR11654 | ||||||||
NCBI | gene | 177973 | |||||||
RefSeq | protein | NM_069601.5 | |||||||
SwissProt | UniProtAcc | Q17758 | |||||||
UniProt_GCRP | UniProtAcc | Q17758 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 29 Apr 2009 13:55:04 | WBPerson9133 | Name_change (2) | ||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pept | ||||||||
Allele (42) | |||||||||
Strain | WBStrain00031859 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Ortholog (36) | |||||||||
Paralog | WBGene00003877 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00003878 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | pept-2 encodes a high-affinity, proton-coupled oligopeptide transporter; when expressed in Xenopus ooctyes, PEPT-2 exhibits proton-coupled transport activity for a broad spectrum of peptide substrates; pept-2 mRNA is detected at all stages of development, but is expressed at highest levels in late larval and adult stages; additionally, a pept-2::GFP reporter exhibits expression primarily in vulval, pharyngeal, and anal muscles. | Paper_evidence | WBPaper00003116 | |||||
WBPaper00005654 | |||||||||
WBPaper00006186 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 14 Dec 2009 00:00:00 | ||||||||
Automated_description | Predicted to enable dipeptide transmembrane transporter activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Expressed in anal depressor muscle; anal sphincter muscle; pharyngeal muscle cell; and vulval muscle. Is an ortholog of human SLC15A1 (solute carrier family 15 member 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C06G8.2 | |||||||
Corresponding_CDS_history | C06G8.2:wp61 | ||||||||
Corresponding_transcript | C06G8.2.1 | ||||||||
Other_sequence | AF000417 | ||||||||
Hbac_isotig02011 | |||||||||
JI166324.1 | |||||||||
CRC06628_1 | |||||||||
BUC00638_1 | |||||||||
JI180326.1 | |||||||||
Acan_isotig15070 | |||||||||
Associated_feature | WBsf646332 | ||||||||
WBsf997699 | |||||||||
WBsf1018139 | |||||||||
WBsf229043 | |||||||||
Experimental_info | RNAi_result | WBRNAi00039948 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027802 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010347 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1420 | ||||||||
Expr8047 | |||||||||
Expr1010296 | |||||||||
Expr1031824 | |||||||||
Expr1144022 | |||||||||
Expr2014824 | |||||||||
Expr2033058 | |||||||||
Drives_construct | WBCnstr00009191 | ||||||||
WBCnstr00013076 | |||||||||
WBCnstr00037950 | |||||||||
Construct_product | WBCnstr00007869 | ||||||||
WBCnstr00037950 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (148) | |||||||||
Interaction (17) | |||||||||
Map_info (4) | |||||||||
Reference | WBPaper00003116 | ||||||||
WBPaper00003734 | |||||||||
WBPaper00003971 | |||||||||
WBPaper00006186 | |||||||||
WBPaper00011545 | |||||||||
WBPaper00023015 | |||||||||
WBPaper00031849 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00053532 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |