WormBase Tree Display for Gene: WBGene00003785
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| WBGene00003785 | SMap | S_parent | Sequence | Y53C12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nos-3 | Person_evidence | WBPerson575 | |||||
| Sequence_name | Y53C12B.3 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | syt-1 | ||||||||
| pqn-86 | |||||||||
| Nanos | Paper_evidence | WBPaper00053101 | |||||||
| CELE_Y53C12B.3 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | nos-3 | ||||||||
| DB_info | Database | AceView | gene | 2K39 | |||||
| WormQTL | gene | WBGene00003785 | |||||||
| WormFlux | gene | WBGene00003785 | |||||||
| NDB | locus_tag | CELE_Y53C12B.3 | |||||||
| NCBI | gene | 174535 | |||||||
| RefSeq | protein | NM_001393164.1 | |||||||
| NM_001393165.1 | |||||||||
| NM_063700.4 | |||||||||
| NM_001395805.1 | |||||||||
| NM_063701.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF350042 | |||||||
| TrEMBL | UniProtAcc | A0A7R9XN27 | |||||||
| O62486 | |||||||||
| O18218 | |||||||||
| A0A7R9XLP7 | |||||||||
| A0A7R9XMZ3 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A7R9XMZ3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nos | ||||||||
| Allele (82) | |||||||||
| Strain | WBStrain00022580 | ||||||||
| WBStrain00022615 | |||||||||
| WBStrain00054810 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00031725 | ||||||||
| 00031726 | |||||||||
| 00031727 | |||||||||
| 00031728 | |||||||||
| 00031729 | |||||||||
| 00031730 | |||||||||
| 00031731 | |||||||||
| 00037989 | |||||||||
| Ortholog (20) | |||||||||
| Structured_description | Concise_description | nos-3 encodes a homolog of Drosophila NANOS that physically interacts with FBF-1 (similar, though not orthologous, to Drosophila PUMILIO); NOS-3 is required in development of the hermaphrodite germ-line to promote the switch from sperm to oocyte production, perhaps by forming a complex with FBF-1 that controls fem-3 mRNA. | Paper_evidence | WBPaper00003692 | |||||
| WBPaper00005068 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Involved in positive regulation of meiotic nuclear division. Located in cytoplasm. Expressed in several structures, including Psub3; Psub4; Z2; Z3; and germ line. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53C12B.3a | |||||||
| Y53C12B.3b | |||||||||
| Y53C12B.3c | |||||||||
| Y53C12B.3d | |||||||||
| Y53C12B.3e | |||||||||
| Corresponding_transcript | Y53C12B.3a.1 | ||||||||
| Y53C12B.3b.1 | |||||||||
| Y53C12B.3c.1 | |||||||||
| Y53C12B.3d.1 | |||||||||
| Y53C12B.3e.1 | |||||||||
| Other_sequence | CR00137 | ||||||||
| CRC05300_1 | |||||||||
| CR00136 | |||||||||
| MC05328 | |||||||||
| CR08429 | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1202 | ||||||||
| Expr1203 | |||||||||
| Expr1011795 | |||||||||
| Expr1031771 | |||||||||
| Expr1160694 | |||||||||
| Expr2014358 | |||||||||
| Expr2032599 | |||||||||
| Drives_construct | WBCnstr00008698 | ||||||||
| WBCnstr00008699 | |||||||||
| WBCnstr00008700 | |||||||||
| WBCnstr00035868 | |||||||||
| Construct_product | WBCnstr00005242 | ||||||||
| WBCnstr00008698 | |||||||||
| WBCnstr00008699 | |||||||||
| WBCnstr00008700 | |||||||||
| WBCnstr00035868 | |||||||||
| Antibody | WBAntibody00000240 | ||||||||
| Microarray_results (42) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (122) | |||||||||
| Map_info | Map | II | Position | 1.70862 | Error | 0.00125 | |||
| Positive | Positive_clone | Y53C12B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4543 | |||||||
| 5522 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (65) | |||||||||
| Picture | WBPicture0000013095 | ||||||||
| Remark | Sequence connection from [Kraemer B, Kimble JE, Wickens MP] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
