WormBase Tree Display for Gene: WBGene00003738
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| WBGene00003738 | SMap | S_parent | Sequence | F54F3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nid-1 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F54F3.1 | ||||||||
| Molecular_name | F54F3.1a | ||||||||
| F54F3.1a.1 | |||||||||
| CE18731 | |||||||||
| F54F3.1b | |||||||||
| CE44075 | |||||||||
| F54F3.1c | |||||||||
| CE44038 | |||||||||
| F54F3.1b.1 | |||||||||
| F54F3.1c.1 | |||||||||
| Other_name | CELE_F54F3.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nid-1 | ||||||||
| DB_info | Database | AceView | gene | 5N397 | |||||
| WormQTL | gene | WBGene00003738 | |||||||
| WormFlux | gene | WBGene00003738 | |||||||
| NDB | locus_tag | CELE_F54F3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003738|UniProtKB=Q93791 | |||||||
| family | PTHR24034 | ||||||||
| NCBI | gene | 179770 | |||||||
| RefSeq | protein | NM_001269538.3 | |||||||
| NM_001269536.4 | |||||||||
| NM_001269537.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF320666 | |||||||
| TrEMBL | UniProtAcc | Q93791 | |||||||
| C7FZU4 | |||||||||
| C7FZU3 | |||||||||
| UniProt_GCRP | UniProtAcc | Q93791 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nid | ||||||||
| Allele | WBVar00054142 | Inferred_automatically | From strain object: CH118 | ||||||
| WBVar00274915 | Inferred_automatically | From strain object: IM324 | |||||||
| WBVar01058002 | |||||||||
| WBVar01058003 | |||||||||
| WBVar01058004 | |||||||||
| WBVar01743774 | |||||||||
| WBVar01058005 | |||||||||
| WBVar01743775 | |||||||||
| WBVar01058006 | |||||||||
| WBVar01058007 | |||||||||
| WBVar01058008 | |||||||||
| WBVar01058009 | |||||||||
| WBVar01058010 | |||||||||
| WBVar01058011 | |||||||||
| WBVar01058012 | |||||||||
| WBVar01058013 | |||||||||
| WBVar01058014 | |||||||||
| WBVar01058015 | |||||||||
| WBVar01058016 | |||||||||
| WBVar01058017 | |||||||||
| WBVar01058018 | |||||||||
| WBVar01058019 | |||||||||
| WBVar00264451 | |||||||||
| WBVar01058020 | |||||||||
| WBVar01058021 | |||||||||
| WBVar01058022 | |||||||||
| WBVar01058023 | |||||||||
| WBVar01058024 | |||||||||
| WBVar01058025 | |||||||||
| WBVar01058026 | |||||||||
| WBVar01058027 | |||||||||
| WBVar01058028 | |||||||||
| WBVar01058029 | |||||||||
| WBVar01058030 | |||||||||
| WBVar01058031 | |||||||||
| WBVar01058032 | |||||||||
| WBVar01058033 | |||||||||
| WBVar01058034 | |||||||||
| WBVar01058035 | |||||||||
| WBVar01058036 | |||||||||
| WBVar01058037 | |||||||||
| WBVar01058038 | |||||||||
| WBVar01058039 | |||||||||
| WBVar01058040 | |||||||||
| WBVar01058041 | |||||||||
| WBVar01058042 | |||||||||
| WBVar01058043 | |||||||||
| WBVar01058044 | |||||||||
| WBVar00011395 | |||||||||
| WBVar01058045 | |||||||||
| WBVar01058046 | |||||||||
| WBVar01058047 | |||||||||
| WBVar01058048 | |||||||||
| WBVar01058049 | |||||||||
| WBVar01058050 | |||||||||
| WBVar01058051 | |||||||||
| WBVar01058052 | |||||||||
| WBVar01058053 | |||||||||
| WBVar01058054 | |||||||||
| WBVar01058055 | |||||||||
| WBVar00255841 | |||||||||
| WBVar00473820 | |||||||||
| WBVar00473821 | |||||||||
| WBVar00473822 | |||||||||
| WBVar00473823 | |||||||||
| WBVar00473824 | |||||||||
| WBVar02061603 | |||||||||
| WBVar00473825 | |||||||||
| WBVar02061604 | |||||||||
| WBVar02061605 | |||||||||
| WBVar00473826 | |||||||||
| WBVar00473827 | |||||||||
| WBVar00473828 | |||||||||
| WBVar00473829 | |||||||||
| WBVar00473830 | |||||||||
| WBVar00473831 | |||||||||
| WBVar01868625 | |||||||||
| WBVar00473832 | |||||||||
| WBVar01868626 | |||||||||
| WBVar00473833 | |||||||||
| WBVar01868627 | |||||||||
| WBVar00473834 | |||||||||
| WBVar01868628 | |||||||||
| WBVar00473835 | |||||||||
| WBVar00473836 | |||||||||
| WBVar01868629 | |||||||||
| WBVar00473837 | |||||||||
| WBVar01868630 | |||||||||
| WBVar00473838 | |||||||||
| WBVar01868631 | |||||||||
| WBVar01868632 | |||||||||
| WBVar01868633 | |||||||||
| WBVar01868634 | |||||||||
| WBVar00054147 | |||||||||
| WBVar01868635 | |||||||||
| WBVar01462307 | |||||||||
| WBVar01868636 | |||||||||
| WBVar01868637 | |||||||||
| WBVar01868638 | |||||||||
| WBVar01868639 | |||||||||
| WBVar00263812 | |||||||||
| WBVar01500212 | |||||||||
| WBVar01500213 | |||||||||
| WBVar01499299 | |||||||||
| WBVar01499316 | |||||||||
| WBVar00099934 | |||||||||
| Legacy_information | [Kramer JM] nid for NIDogene, basement membrane protein. RNA inhibition experiments and expression of versions of the protein missing single domains cause variable phenotypes ranging from embryonic arrest to abnormal gonads in adults. | ||||||||
| Strain | WBStrain00022050 | ||||||||
| WBStrain00005029 | |||||||||
| WBStrain00005030 | |||||||||
| WBStrain00022049 | |||||||||
| WBStrain00050778 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00003071 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00003072 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004374 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008609 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008779 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015083 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019756 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019811 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020481 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | nid-1 encodes the single C.elegans homolog of the nidogen (entactin) protein; members of the nidogen protein family are structural components of basement membranes and are believed to connect laminin and collagen IV networks together; in C. elegans, nid-1 is not required for basement membrane assembly, however, nid-1 is required for the proper positioning of the longitudinal neurons and to direct axons during migration; nid-1 is also required for synaptogenesis and for normal cholinergic synaptic transmission; nid-1 is expressed in body wall muscle, the PLM neurons, intestinal cells and the distal tip cell and is localized to basement membranes and presynaptic zones. | Paper_evidence | WBPaper00003979 | |||||
| WBPaper00004414 | |||||||||
| WBPaper00005871 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 09 Sep 2010 00:00:00 | ||||||||
| Automated_description | An extracellular matrix structural constituent. Involved in several processes, including cholinergic synaptic transmission; nervous system development; and positive regulation of anterior/posterior axon guidance. Located in basal part of cell and basement membrane. Expressed in several structures, including enteric muscle; gonad; labial sensillum; neurons; and vulval cell. Is an ortholog of human NID1 (nidogen 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54F3.1a | |||||||
| F54F3.1b | |||||||||
| F54F3.1c | |||||||||
| Corresponding_transcript | F54F3.1a.1 | ||||||||
| F54F3.1b.1 | |||||||||
| F54F3.1c.1 | |||||||||
| Other_sequence (46) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015655 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00068104 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048375 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067111 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00068034 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092929 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093570 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028 | ||||||||
| Expr1029 | |||||||||
| Expr1074 | |||||||||
| Expr2567 | |||||||||
| Expr14282 | |||||||||
| Expr1019999 | |||||||||
| Expr1031748 | |||||||||
| Expr1152164 | |||||||||
| Expr2014261 | |||||||||
| Expr2032501 | |||||||||
| Drives_construct | WBCnstr00004818 | ||||||||
| WBCnstr00035905 | |||||||||
| Construct_product | WBCnstr00035905 | ||||||||
| Antibody | WBAntibody00000271 | ||||||||
| WBAntibody00000327 | |||||||||
| WBAntibody00001709 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (213) | |||||||||
| Interaction (54) | |||||||||
| Map_info | Map | V | Position | 4.72708 | Error | 0.001213 | |||
| Positive | Positive_clone | F54F3 | Person_evidence | WBPerson345 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4279 | |||||||
| 4308 | |||||||||
| 4535 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (54) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
