WormBase Tree Display for Gene: WBGene00003692
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| WBGene00003692 | SMap | S_parent | Sequence | T06C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-102 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T06C12.6 | ||||||||
| Molecular_name | T06C12.6 | ||||||||
| T06C12.6.1 | |||||||||
| CE16356 | |||||||||
| Other_name | CELE_T06C12.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-102 | ||||||||
| DB_info | Database | AceView | gene | 5Q354 | |||||
| WormQTL | gene | WBGene00003692 | |||||||
| WormFlux | gene | WBGene00003692 | |||||||
| NDB | locus_tag | CELE_T06C12.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003692|UniProtKB=Q9XVJ1 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 180062 | |||||||
| RefSeq | protein | NM_074566.7 | |||||||
| TrEMBL | UniProtAcc | Q9XVJ1 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XVJ1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00035353 | ||||||||
| WBStrain00030227 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00102530 | ||||||||
| 00102531 | |||||||||
| 00102532 | |||||||||
| 00111565 | |||||||||
| 00111566 | |||||||||
| 00111567 | |||||||||
| 00111568 | |||||||||
| Contained_in_operon | CEOP5448 | ||||||||
| Ortholog (38) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Concise_description | nhr-102 encodes a nuclear receptor that is most highly conserved amongst nematode species. | Paper_evidence | WBPaper00027309 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T06C12.6 | |||||||
| Corresponding_transcript | T06C12.6.1 | ||||||||
| Other_sequence | EV854163.1 | ||||||||
| Associated_feature | WBsf978525 | ||||||||
| WBsf1002357 | |||||||||
| WBsf1002358 | |||||||||
| WBsf1021066 | |||||||||
| WBsf1021067 | |||||||||
| WBsf1021068 | |||||||||
| WBsf235093 | |||||||||
| WBsf235094 | |||||||||
| Transcription_factor | WBTranscriptionFactor000362 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00052631 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052630 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084690 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033601 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram105 | ||||||||
| Expr7653 | |||||||||
| Expr1016890 | |||||||||
| Expr1031719 | |||||||||
| Expr1156234 | |||||||||
| Expr2013999 | |||||||||
| Expr2032239 | |||||||||
| Drives_construct | WBCnstr00001163 | ||||||||
| WBCnstr00012798 | |||||||||
| WBCnstr00035941 | |||||||||
| Construct_product | WBCnstr00016825 | ||||||||
| WBCnstr00016841 | |||||||||
| WBCnstr00035941 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | V | Position | 9.0507 | Error | 0.007464 | |||
| Positive | Positive_clone | T06C12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5343 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00050371 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
