WormBase Tree Display for Gene: WBGene00003649

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WBGene00003649	Evidence	Paper_evidence	WBPaper00003416
	SMap	S_parent	Sequence	CHROMOSOME_V
	Identity	Version	1
		Name	CGC_name	nhr-59	Person_evidence	WBPerson600
			Sequence_name	T27B7.1
			Molecular_name	T27B7.1a
				T27B7.1a.1
				CE30194
				T27B7.1b
				CE51053
				T27B7.1b.1
			Other_name	CELE_T27B7.1	Accession_evidence	NDB	BX284605
			Public_name	nhr-59
		DB_info	Database	AceView	gene	5C756
				WormQTL	gene	WBGene00003649
				WormFlux	gene	WBGene00003649
				NDB	locus_tag	CELE_T27B7.1
				Panther	gene	CAEEL\|WormBase=WBGene00003649\|UniProtKB=Q9TXJ1
					family	PTHR45680
				NCBI	gene	178707
				RefSeq	protein	NM_001316820.3
						NM_071223.8
				SwissProt	UniProtAcc	Q9TXJ1
				TrEMBL	UniProtAcc	A0A0M9JJE1
				UniProt_GCRP	UniProtAcc	Q9TXJ1
		Species	Caenorhabditis elegans
		History	Version_change	1	07 Apr 2004 11:29:32	WBPerson1971	Event	Imported	Initial conversion from geneace
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	nhr
		Allele (68)
		RNASeq_FPKM (74)
		GO_annotation	00001785
			00097076
			00097077
			00097078
			00111402
			00111403
			00111404
			00111405
		Ortholog (58)
		Paralog (217)
		Structured_description	Automated_description	Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus.	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Molecular_info	Corresponding_CDS	T27B7.1a
			T27B7.1b
		Corresponding_transcript	T27B7.1a.1
			T27B7.1b.1
		Other_sequence	CBC07202_1
		Associated_feature	WBsf652505
			WBsf999487
			WBsf999488
			WBsf1019282
			WBsf233407
		Transcription_factor	WBTranscriptionFactor000661
	Experimental_info	RNAi_result	WBRNAi00036020	Inferred_automatically	RNAi_primary
			WBRNAi00054273	Inferred_automatically	RNAi_primary
			WBRNAi00019307	Inferred_automatically	RNAi_primary
			WBRNAi00021187	Inferred_automatically	RNAi_primary
			WBRNAi00115852	Inferred_automatically	RNAi_primary
		Expr_pattern	Expr1024884
			Expr1157823
			Expr2014209
			Expr2032450
		Drives_construct	WBCnstr00035971
		Construct_product	WBCnstr00035971
		Microarray_results (20)
		Expression_cluster	WBPaper00037682:sma-2_sma-4_upregulated
			WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
			WBPaper00037950:all-neurons_L2-larva_expressed
			WBPaper00037950:coelomocytes_L1-larva_expressed
			WBPaper00037950:coelomocytes_L2-larva_expressed
			WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
			WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
			WBPaper00037950:hypodermis_L3-L4-larva_expressed
			WBPaper00037950:intestine_L2-larva_expressed
			WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
			WBPaper00040221:DAF-12_target_ALF4
			WBPaper00041222:unc-120(st364)_downregulated
			WBPaper00042561:smgl-1(RNAi)_downregulated
			WBPaper00044246:pgrn-1_ced-3_downregulated
			WBPaper00044736:flat_dev_expression
			WBPaper00046338:intestine_unique
			WBPaper00048988:neuron_expressed
			WBPaper00049495:starvation-refeeding_regulated
			WBPaper00049942:HeatShock_downregulated_hsf-1(+)
			WBPaper00049942:hsf-1(RNAi)_downregulated
			WBPaper00050468:hlh-30-dependent_Cry5B_regulated
			WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
			WBPaper00050488:20C_vs_25C_regulated_N2_adult
			WBPaper00050488:adult_vs_dauer_regulated_N2_20C
			WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
			WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
			WBPaper00050990:intestine_enriched
			WBPaper00050990:intestine_expressed
			WBPaper00051257:Levamisole_upregulated
			WBPaper00051352:Long-Term-Association-Memory_upregulated
			WBPaper00052884:emb-4(hc60)_upregulated
			WBPaper00053184:sma-2(rax5)_upregulated
			WBPaper00053184:sma-4(rax3)_upregulated
			WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
			WBPaper00053810:clk-1(qm30)_upregulated
			WBPaper00053810:nuo-6(qm200)_upregulated
			WBPaper00055354:Rapamycin-Allantoin_downregulated
			WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
			WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
			WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
			WBPaper00055354:Rapamycin-Rifampicin_upregulated
			WBPaper00055354:Rifampicin-Allantoin_upregulated
			WBPaper00055354:Rifampicin-Psora_upregulated
			WBPaper00055354:Rifampicin_upregulated
			WBPaper00055897:heat-shock_downregulated
			WBPaper00055941:nuo-6(qm200)_upregulated
			WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
			WBPaper00056290:hsp-6(mg585)_upregulated
			WBPaper00056443:sek-1(km4)_upregulated
			WBPaper00056471:S.aureus-4h_upregulated_N2
			WBPaper00057041:unc-70(cas983)_downregulated
			WBPaper00058598:mex-1(or286)_upregulated
			WBPaper00058598:mex-3(eu149)_upregulated
			WBPaper00058598:sin-3(tm1276)_downregulated
			WBPaper00058711:paraquat_downregulated
			WBPaper00058948:PA14_downregulated
			WBPaper00059471:EGL-43_interacting
			WBPaper00059664:srbc-48(ac23)_upregulated
			WBPaper00059754:E.faecalis_OG1RF_upregulated
			WBPaper00059895:wounding_upregulated
			WBPaper00059987:Wounding_upregulated
			WBPaper00060014:set-2(tm1630)_downregulated
			WBPaper00060014:set-2(zr2012)_downregulated
			WBPaper00060526:plp-1(ok2155)_downregulated
			WBPaper00060661:sensory-neuron_enriched
			WBPaper00061203:sin-3(tm1276)_upregulated
			WBPaper00061340:FLP
			WBPaper00061340:ILso
			WBPaper00061340:Neuroblast_AIZ_FLP
			WBPaper00061340:NSM_parent
			WBPaper00061340:OLL_parent
			WBPaper00061340:PLM_ALN_grandparent
			WBPaper00061340:RIA_parent
			WBPaper00061439:unc-30(ok613)_downregulated
			WBPaper00061479:hda-1(ne4752)_upregulated
			WBPaper00061527:nhr-18-C34D1.4_6256
			WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
			WBPaper00062159:hda-2(ok1479)_upregulated
			WBPaper00062193:hsf-1(RNAi)_downregulated
			WBPaper00062193:skn-1(RNAi)_downregulated
			WBPaper00062440:crh-1(n3315)_downregulated
			WBPaper00062440:crh-1(syb385)_downregulated
			WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
			WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
			WBPaper00064306:Agaro-oligosaccharides_upregulated
			WBPaper00064532:pals-25(icb98)_upregulated
			WBPaper00064871:hypoxia_downregulated_F2
			WBPaper00065734:unc-25(e156)_upregulated
			WBPaper00065995:M.humicola-extract_downregulated_N2
			WBPaper00066062:xrep-4(lax137)_upregulated
			WBPaper00066110:Doxorubicin_upregulated_diploid
			WBPaper00066110:tetraploid_vs_diploid_upregulated
			cgc4489_group_1
			cgc4489_group_18
			WBPaper00025141:N2_Expressed_Genes
			WBPaper00025141:unc-4::GFP_Expressed_Genes
			WBPaper00030839:Embryo_Pan_Neuronal
			WBPaper00030985:Enterococcus_faecalis_downregulated
			WBPaper00030985:Photorhabdus_luminescens_upregulated
			WBPaper00031003:hlh_1_enriched
			WBPaper00032165:differentially_expressed_with_age_medoid_2
			WBPaper00032948:StarveUp2
			WBPaper00034739:N2moreDR1350
			WBPaper00034757:up_by_oxidative_stress
			WBPaper00036123:Atrazine_regulated
			WBPaper00036286:Pattern_F
			WBPaper00041174:environmental
			WBPaper00041174:genotypic
			WBPaper00041174:genotypic_and_environmental
			WBPaper00041939:control_vs_EtBr-exposed_48h
			WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
			WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
			WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
			WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
			WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
			WBPaper00045960:L4-lethargus_upregulated
			WBPaper00047070:N2_starvation_upregulated
			WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
			WBPaper00048989:N2_allantoin_downregulated
			WBPaper00053236:Starvation_regulated_GR1307
			WBPaper00053236:Starvation_regulated_N2
			WBPaper00057098:SiO2-nanoparticles_upregulated
		Interaction	WBInteraction000141286
			WBInteraction000246668
	Map_info	Map	V	Position	-15.0232	Error	0.006515
		Positive	Positive_clone	T27B7	Inferred_automatically	From sequence, transcript, pseudogene data
		Mapping_data	Multi_point	4860
				4829
				5365
				5418
				5583
		Pseudo_map_position
	Reference	WBPaper00026592
		WBPaper00027309
	Remark	Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.	CGC_data_submission
	Method	Gene