WormBase Tree Display for Gene: WBGene00003508
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| WBGene00003508 | Evidence | Person_evidence | WBPerson490 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | B0379 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | mut-16 | Person_evidence | WBPerson261 | |||||
| Sequence_name | B0379.3 | ||||||||
| Molecular_name | B0379.3a | ||||||||
| B0379.3a.1 | |||||||||
| CE40346 | |||||||||
| B0379.3b | |||||||||
| CE40347 | |||||||||
| B0379.3b.1 | |||||||||
| Other_name | pqn-3 | Person_evidence | WBPerson490 | ||||||
| rde-6 | Paper_evidence | WBPaper00036036 | |||||||
| CELE_B0379.3 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | mut-16 | ||||||||
| DB_info | Database | AceView | gene | 1K661 | |||||
| WormQTL | gene | WBGene00003508 | |||||||
| WormFlux | gene | WBGene00003508 | |||||||
| NDB | locus_tag | CELE_B0379.3 | |||||||
| NCBI | gene | 172873 | |||||||
| RefSeq | protein | NM_060259.7 | |||||||
| NM_060260.9 | |||||||||
| TREEFAM | TREEFAM_ID | TF319090 | |||||||
| TrEMBL | UniProtAcc | O62011 | |||||||
| Q9U3S5 | |||||||||
| UniProt_GCRP | UniProtAcc | O62011 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 16 Oct 2013 10:12:26 | WBPerson2970 | Name_change | Other_name | rde-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mut | ||||||||
| Allele (69) | |||||||||
| Possibly_affected_by | WBVar02152952 | ||||||||
| WBVar02153070 | |||||||||
| WBVar02153071 | |||||||||
| Strain | WBStrain00022637 | ||||||||
| WBStrain00028973 | |||||||||
| WBStrain00028974 | |||||||||
| WBStrain00007950 | |||||||||
| WBStrain00040773 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00036800 | ||||||||
| 00036801 | |||||||||
| 00036802 | |||||||||
| 00036803 | |||||||||
| 00036804 | |||||||||
| 00036805 | |||||||||
| 00036806 | |||||||||
| 00036807 | |||||||||
| 00036808 | |||||||||
| Ortholog (17) | |||||||||
| Structured_description | Concise_description | mut-16 encodes a glutamine/asparagine (Q/N)-rich domain-containing protein that lacks obvious homologs outside of other nematode species; MUT-16 activity is required for RNA-mediated interference (RNAi), transgene silencing in germ-line and somatic tissues, and for maintaining low levels of transposon mobilization; MUT-16 is thus predicted to play a role in chromatin organizataion and/or regulation of gene expression. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00005423 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Involved in obsolete negative regulation of transposition, DNA-mediated; regulatory ncRNA-mediated post-transcriptional gene silencing; and siRNA processing. Located in mutator focus and nucleus. Expressed in several structures, including germ cell; germ line; and somatic cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0379.3a | |||||||
| B0379.3b | |||||||||
| Corresponding_CDS_history | B0379.3a:wp77 | ||||||||
| B0379.3a:wp162 | |||||||||
| B0379.3b:wp77 | |||||||||
| B0379.3b:wp162 | |||||||||
| Corresponding_transcript | B0379.3a.1 | ||||||||
| B0379.3b.1 | |||||||||
| Associated_feature | WBsf976551 | ||||||||
| WBsf976552 | |||||||||
| WBsf976553 | |||||||||
| WBsf976554 | |||||||||
| WBsf976555 | |||||||||
| WBsf976556 | |||||||||
| WBsf984908 | |||||||||
| WBsf218389 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr10153 | ||||||||
| Expr11747 | |||||||||
| Expr14750 | |||||||||
| Expr1016894 | |||||||||
| Expr1031604 | |||||||||
| Expr1143159 | |||||||||
| Expr2013831 | |||||||||
| Expr2032071 | |||||||||
| Drives_construct | WBCnstr00014702 | ||||||||
| WBCnstr00019234 | |||||||||
| WBCnstr00041416 | |||||||||
| WBCnstr00042129 | |||||||||
| Construct_product | WBCnstr00014702 | ||||||||
| WBCnstr00042129 | |||||||||
| Regulate_expr_cluster | WBPaper00059605:mut-16(pk710)_downregulated | ||||||||
| WBPaper00059605:mut-16(pk710)_upregulated | |||||||||
| WBPaper00059605:MUT-16_interacting | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction (250) | |||||||||
| Anatomy_function | WBbtf1091 | ||||||||
| WBbtf1092 | |||||||||
| WBProcess | WBbiopr:00000057 | ||||||||
| Map_info | Map | I | Position | 4.60801 | Error | 0.009888 | |||
| Positive | Positive_clone | B0379 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (41) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
