WormBase Tree Display for Gene: WBGene00003420
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| WBGene00003420 | Evidence | CGC_data_submission | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T02G5 | |||||||
| Identity | Version | 3 | ||||||||
| Name | CGC_name | msh-4 | Person_evidence | WBPerson1547 | ||||||
| Sequence_name | T02G5.6 | |||||||||
| Molecular_name | T02G5.6a | |||||||||
| T02G5.6b | ||||||||||
| Other_name | CELE_T02G5.6 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | msh-4 | |||||||||
| DB_info | Database | AceView | gene | 2H369 | ||||||
| WormQTL | gene | WBGene00003420 | ||||||||
| WormFlux | gene | WBGene00003420 | ||||||||
| NDB | locus_tag | CELE_T02G5.6 | ||||||||
| NCBI | gene | 191708 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 28 May 2013 16:17:43 | WBPerson615 | Event | Changed_class | CDS | Pseudogene | ||||
| 3 | 29 May 2013 15:31:58 | WBPerson615 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | msh | |||||||||
| Allele (14) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Structured_description | Concise_description | msh-4 is a partial duplication of the him-14 locus, which encodes the C. elegans MSH4 ortholog; as currently annotated in WormBase, msh-4 can encode a protein nearly identical to HIM-14 residues 631-737, differing only at three amino acids; msh-4(RNAi) results in no apparent defects. | Paper_evidence | WBPaper00003779 | ||||||
| Curator_confirmed | WBPerson1843 | |||||||||
| Date_last_updated | 19 Mar 2009 00:00:00 | |||||||||
| Automated_description | Enriched in Z1.p; Z4.a; germline precursor cell; gon_male_dtc anterior; and gon_male_dtc posterior based on RNA-seq studies. Is affected by several genes including daf-2; sir-2.1; and pgl-1 based on microarray and RNA-seq studies. Is affected by six chemicals including metformin; Sirolimus; and Rifampin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | T02G5.6:wp238 | ||||||||
| Corresponding_pseudogene | T02G5.6a | |||||||||
| T02G5.6b | ||||||||||
| Other_sequence | Dviv_isotig25354 | |||||||||
| Experimental_info | Expr_pattern | Expr1026609 | ||||||||
| Expr1155861 | ||||||||||
| Microarray_results (12) | ||||||||||
| Expression_cluster (48) | ||||||||||
| Interaction (150) | ||||||||||
| Map_info | Map | II | Position | 0.493171 | ||||||
| Positive | Positive_clone | T02G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference (12) | ||||||||||
| Remark | Sequence connection from [Boulton S, Vidal M] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||||
| [200225 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (0.49197) | ||||||||||
| Method | Gene |
