Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00003281

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00003281EvidencePaper_evidenceWBPaper00004928
SMapS_parentSequenceF36H1
IdentityVersion1
NameCGC_namemir-53Person_evidenceWBPerson18
Sequence_nameF36H1.8
Molecular_nameF36H1.8
F36H1.8a
F36H1.8b
Other_namecel-mir-53RemarkmiRBase V21 import
Cel-Mir-52-P2RemarkMirGeneDB 2.1 import
CELE_F36H1.8Accession_evidenceNDBBX284604
Public_namemir-53
DB_infoDatabasemiRBaseaccMI0000024
SignaLinkmirnacel-mir-53
MirGeneDBcelCel-Mir-52-P2
NDBlocus_tagCELE_F36H1.8
NCBIgene259924
RefSeqproteinNR_000448.2
RNAcentralURSidURS0000207F0E
URS00002563DB
URS00002D7C10
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001265
Gene_classmir
AlleleWBVar01500079
WBVar01498996
WBVar01499925
WBVar00435169
WBVar00940976
WBVar02123093
WBVar02124207
WBVar00288072
WBVar00090801
WBVar01500245
StrainWBStrain00027416
WBStrain00027578
In_clusterMIR-52
RNASeq_FPKM (74)
Structured_descriptionConcise_descriptionmir-53 encodes a microRNA, a small non-protein coding RNA; mir-53 is expressed constitutively throughout development; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of mir-53 is not known.Paper_evidenceWBPaper00004927
WBPaper00005825
Curator_confirmedWBPerson324
Date_last_updated20 Jan 2005 00:00:00
Automated_descriptionExpressed in arcade cell; distal tip cell; hypodermis; muscle cell; and neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_transcriptF36H1.8
F36H1.8a
F36H1.8b
Other_sequenceAJ487577
Associated_featureWBsf979115
WBsf997752
Experimental_infoExpr_patternExpr2483
Expr8458
Expr9256
Expr13545
Drives_constructWBCnstr00005542
WBCnstr00006123
WBCnstr00013855
Construct_productWBCnstr00006515
WBCnstr00006516
Expression_clusterWBPaper00040221:DAF-12_target_ALF4
WBPaper00045316:miRNA_prg-1_downregulated_adult
WBPaper00045316:miRNA_prg-1_downregulated_L1
WBPaper00045316:miRNA_prg-1_downregulated_L2
WBPaper00045316:miRNA_prg-1_downregulated_L3
WBPaper00045316:miRNA_prg-1_downregulated_L4
WBPaper00045316:miRNA_prg-1_L1_vs_embryo_downregulated_adult
WBPaper00046156:eat-2(ad1116)_Day8_upregulated
WBPaper00046303:P.aeruginosa_upregulated_miRNA
WBPaper00049006:nicotine_downregulated_F1
WBPaper00049006:nicotine_downregulated_F2
WBPaper00049990:glp-4(bn2)_26C_vs_15C_upregulated
WBPaper00049990:glp-4(bn2)_26C_vs_N2_26C_upregulated
WBPaper00050386:C.albicans_4h_downregulated
WBPaper00051404:alg-1(gk214)_upregulated_miRNA
WBPaper00051404:alg-2(ok304)_upregulated_miRNA
WBPaper00051404:alg-5(ram2)_upregulated_miRNA
WBPaper00051404:alg-5(tm1163)_downregulated_miRNA
WBPaper00051404:alg-5(tm1163)_upregulated_miRNA
WBPaper00052959:hsf-1(RNAi)_regulated_miRNA_HS-dependent
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00057154:HeatShock_downregulated_miRNA
WBPaper00057162:meg-3_meg-4_upregulated_sRNA
Interaction (12)
Map_infoMapIVPosition4.78723Error0.000833
PositivePositive_cloneF36H1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00004927
WBPaper00005825
WBPaper00019487
WBPaper00031335
WBPaper00032187
WBPaper00032329
WBPaper00032927
WBPaper00035664
WBPaper00036127
WBPaper00043989
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene