WormBase Tree Display for Variation: WBVar00288072
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| WBVar00288072 | Evidence | Paper_evidence | WBPaper00036127 | ||
|---|---|---|---|---|---|
| Name | Public_name | nDf67 | |||
| HGVSg | CHROMOSOME_IV:g.11023992_11028368del | ||||
| Sequence_details | SMap | S_parent | Sequence | F36H1 | |
| Flanking_sequences | gagctgagcttgaatcaggacaagtgagct | tttcaataattataattggagttgaacaga | |||
| Mapping_target | F36H1 | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00027570 | ||||
| WBStrain00027572 | |||||
| WBStrain00027575 | |||||
| Laboratory | MT | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00000109 | |||
| WBGene00009494 | |||||
| WBGene00003279 | |||||
| WBGene00003281 | |||||
| WBGene00219935 | |||||
| Transcript | F36H1.9.2 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| cDNA_position | 709-? | ||||
| Exon_number | 5/5 | ||||
| F36H1.9.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | 694-? | ||||
| Exon_number | 6/6 | ||||
| F36H1.8 | |||||
| F36H1.7 | |||||
| F36H1.6.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 5-7/8 | ||||
| Exon_number | 6-9/9 | ||||
| F36H1.17 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| Interactor | WBInteraction000504814 | ||||
| WBInteraction000517502 | |||||
| WBInteraction000517505 | |||||
| WBInteraction000517506 | |||||
| WBInteraction000517512 | |||||
| WBInteraction000517513 | |||||
| WBInteraction000517514 | |||||
| Genetics | Interpolated_map_position | IV | 4.78536 | ||
| Description | Phenotype_not_observed | WBPhenotype:0000031 | Paper_evidence | WBPaper00036127 | |
| Curator_confirmed | WBPerson712 | ||||
| WBPhenotype:0000062 | Paper_evidence | WBPaper00036127 | |||
| Curator_confirmed | WBPerson712 | ||||
| WBPhenotype:0001414 | Paper_evidence | WBPaper00036127 | |||
| Curator_confirmed | WBPerson712 | ||||
| WBPhenotype:0001748 | Paper_evidence | WBPaper00036127 | |||
| Curator_confirmed | WBPerson712 | ||||
| Reference | WBPaper00036127 | ||||
| Method | Deletion_allele |
