WormBase Tree Display for Gene: WBGene00003262
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| WBGene00003262 | Evidence | Paper_evidence | WBPaper00004927 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y41G9A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-34 | Person_evidence | WBPerson18 | |||||
| Sequence_name | Y41G9A.7 | ||||||||
| Molecular_name | Y41G9A.7 | ||||||||
| Y41G9A.7a | |||||||||
| Y41G9A.7b | |||||||||
| Other_name | cel-mir-34 | Remark | miRBase V21 import | ||||||
| MirGeneDB 2.1 import | |||||||||
| CELE_Y41G9A.7 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-34 | ||||||||
| DB_info | Database | miRBase | acc | MI0000005 | |||||
| SignaLink | mirna | cel-mir-34 | |||||||
| MirGeneDB | cel | Cel-Mir-34 | |||||||
| NDB | locus_tag | CELE_Y41G9A.7 | |||||||
| NCBI | gene | 260162 | |||||||
| RefSeq | protein | NR_001274.2 | |||||||
| RNAcentral | URSid | URS000003ACDF | |||||||
| URS0000230C22 | |||||||||
| URS00003E472F | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar00145843 | ||||||||
| WBVar01498623 | |||||||||
| WBVar01499636 | |||||||||
| WBVar01130507 | |||||||||
| WBVar01130508 | |||||||||
| WBVar00090815 | |||||||||
| Strain (18) | |||||||||
| In_cluster | MIR-34 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Structured_description | Concise_description | mir-34 encodes a microRNA, a small non-protein coding RNA; miR-34 expression increases during adulthood, and loss of mir-34 activity results in increased adult lifespan along with increased resistance to heat and oxidative stress; in regulating adult lifespan, mir-34 functions via negative regulation of autophagy; mir-34 is conserved in C. briggsae as well as in Drosophila and humans. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00006373 | |||||||||
| WBPaper00010162 | |||||||||
| WBPaper00040404 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 15 Nov 2011 00:00:00 | ||||||||
| Automated_description | Involved in several processes, including determination of adult lifespan; negative regulation of autophagy; and response to heat. Expressed in excretory canal; hypodermis; neurons; somatic nervous system; and vulval precursor cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | Y41G9A.7 | |||||||
| Y41G9A.7a | |||||||||
| Y41G9A.7b | |||||||||
| Associated_feature | WBsf979142 | ||||||||
| WBsf1004490 | |||||||||
| WBsf1004491 | |||||||||
| WBsf1022548 | |||||||||
| WBsf1022549 | |||||||||
| Experimental_info | Expr_pattern | Expr1666 | |||||||
| Expr2516 | |||||||||
| Expr10884 | |||||||||
| Expr13455 | |||||||||
| Expr13538 | |||||||||
| Drives_construct | WBCnstr00020637 | ||||||||
| Construct_product | WBCnstr00020635 | ||||||||
| WBCnstr00020636 | |||||||||
| WBCnstr00020637 | |||||||||
| WBCnstr00020643 | |||||||||
| WBCnstr00020644 | |||||||||
| Regulate_expr_cluster | WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C | ||||||||
| WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C | |||||||||
| WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C | |||||||||
| WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C | |||||||||
| WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C | |||||||||
| WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_20C | |||||||||
| WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C | |||||||||
| WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C | |||||||||
| WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C | |||||||||
| WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C | |||||||||
| Expression_cluster (34) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | X | Position | -12.6678 | Error | 0.001309 | |||
| Positive | Positive_clone | Y41G9A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5597 | |||||||
| Pseudo_map_position | |||||||||
| Reference (25) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
