WormBase Tree Display for Gene: WBGene00003075

WBGene00003075 SMap: S_parent: Sequence: T04H1
  Identity: Version: 1
    Name: CGC_name: lrx-1 Person_evidence: WBPerson220
      Sequence_name: T04H1.6
      Molecular_name: T04H1.6
        T04H1.6.1
        CE38413
      Other_name: egf-5
        CELE_T04H1.6 Accession_evidence: NDB BX284605
      Public_name: lrx-1
    DB_info: Database: AceView gene 5M735
        WormQTL gene WBGene00003075
        WormFlux gene WBGene00003075
        NDB locus_tag CELE_T04H1.6
        Panther gene CAEEL|WormBase=WBGene00003075|UniProtKB=Q22179
          family PTHR24270
        NCBI gene 192091
        RefSeq protein NM_073671.6
        TREEFAM TREEFAM_ID TF316777
        TrEMBL UniProtAcc Q22179
        UniProt_GCRP UniProtAcc Q22179
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lrx
    Allele (50)
    Legacy_information: [C.elegansII] NMK. Cross hybridization to lrp-1 probe. [GS]
    Strain: WBStrain00032960
    RNASeq_FPKM (74)
    Ortholog (27)
    Paralog: WBGene00003245 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: lrx-1 encodes a protein that contains four class A low-density lipoprotein receptor domains. Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in mc3; pharynx; pm1; pm2; and pm7 based on microarray and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including multi-walled carbon nanotube; D-glucose; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: LDL receptor-like superfamily; Low-density lipoprotein (LDL) receptor class A repeat; and Low-density lipoprotein receptor domain class A. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T04H1.6
    Corresponding_CDS_history: T04H1.6:wp141
    Corresponding_transcript: T04H1.6.1
    Other_sequence: FG350754.1
      JI219905.1
    Associated_feature: WBsf647352
      WBsf1001545
      WBsf1001546
      WBsf1020547
      WBsf1020548
      WBsf232621
  Experimental_info: RNAi_result: WBRNAi00018160 Inferred_automatically: RNAi_primary
      WBRNAi00052420 Inferred_automatically: RNAi_primary
      WBRNAi00018159 Inferred_automatically: RNAi_primary
      WBRNAi00035154 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020816
      Expr1031450
      Expr1156044
      Expr2013286
      Expr2031517
    Drives_construct: WBCnstr00036248
    Construct_product: WBCnstr00036248
    Microarray_results (19)
    Expression_cluster (158)
    Interaction (79)
  Map_info: Map: V Position: 3.93 Error: 0.005731
    Positive: Positive_clone: GS#LRP2
        T04H1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
    WBPaper00064648
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene