WormBase Tree Display for Gene: WBGene00003075

WBGene00003075 SMap: S_parent: Sequence: T04H1
  Identity: Version: 1
    Name: CGC_name: lrx-1 Person_evidence: WBPerson220
      Sequence_name: T04H1.6
      Molecular_name: T04H1.6
        T04H1.6.1
        CE38413
      Other_name: egf-5
        CELE_T04H1.6 Accession_evidence: NDB BX284605
      Public_name: lrx-1
    DB_info: Database: AceView gene 5M735
        WormQTL gene WBGene00003075
        WormFlux gene WBGene00003075
        NDB locus_tag CELE_T04H1.6
        Panther gene CAEEL|WormBase=WBGene00003075|UniProtKB=Q22179
          family PTHR24270
        NCBI gene 192091
        RefSeq protein NM_073671.6
        TREEFAM TREEFAM_ID TF316777
        TrEMBL UniProtAcc Q22179
        UniProt_GCRP UniProtAcc Q22179
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lrx
    Allele (50)
    Legacy_information: [C.elegansII] NMK. Cross hybridization to lrp-1 probe. [GS]
    Strain: WBStrain00032960
    RNASeq_FPKM (74)
    Ortholog (27)
    Paralog: WBGene00003245 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: lrx-1 encodes a protein that contains four class A low-density lipoprotein receptor domains. Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in mc3; pharynx; pm1; pm2; and pm7 based on microarray and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including multi-walled carbon nanotube; D-glucose; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: LDL receptor-like superfamily; Low-density lipoprotein (LDL) receptor class A repeat; and Low-density lipoprotein receptor domain class A. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T04H1.6
    Corresponding_CDS_history: T04H1.6:wp141
    Corresponding_transcript: T04H1.6.1
    Other_sequence: FG350754.1
      JI219905.1
    Associated_feature: WBsf647352
      WBsf1001545
      WBsf1001546
      WBsf1020547
      WBsf1020548
      WBsf232621
  Experimental_info: RNAi_result: WBRNAi00018160 Inferred_automatically: RNAi_primary
      WBRNAi00052420 Inferred_automatically: RNAi_primary
      WBRNAi00018159 Inferred_automatically: RNAi_primary
      WBRNAi00035154 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020816
      Expr1031450
      Expr1156044
      Expr2013286
      Expr2031517
    Drives_construct: WBCnstr00036248
    Construct_product: WBCnstr00036248
    Microarray_results (19)
    Expression_cluster (158)
    Interaction: WBInteraction000030159
      WBInteraction000031122
      WBInteraction000031123
      WBInteraction000031124
      WBInteraction000031125
      WBInteraction000031126
      WBInteraction000031127
      WBInteraction000031128
      WBInteraction000134738
      WBInteraction000138754
      WBInteraction000164287
      WBInteraction000179854
      WBInteraction000189743
      WBInteraction000193790
      WBInteraction000200153
      WBInteraction000201187
      WBInteraction000202194
      WBInteraction000208607
      WBInteraction000210840
      WBInteraction000212392
      WBInteraction000214720
      WBInteraction000227124
      WBInteraction000234203
      WBInteraction000236182
      WBInteraction000245826
      WBInteraction000246947
      WBInteraction000247485
      WBInteraction000254501
      WBInteraction000255047
      WBInteraction000255174
      WBInteraction000257813
      WBInteraction000261676
      WBInteraction000263847
      WBInteraction000265112
      WBInteraction000267189
      WBInteraction000279974
      WBInteraction000280001
      WBInteraction000280043
      WBInteraction000281429
      WBInteraction000281841
      WBInteraction000284370
      WBInteraction000284887
      WBInteraction000287228
      WBInteraction000295021
      WBInteraction000297595
      WBInteraction000315427
      WBInteraction000323570
      WBInteraction000326860
      WBInteraction000328233
      WBInteraction000335159
      WBInteraction000339993
      WBInteraction000356057
      WBInteraction000360191
      WBInteraction000362091
      WBInteraction000383183
      WBInteraction000384893
      WBInteraction000385697
      WBInteraction000395390
      WBInteraction000399540
      WBInteraction000410534
      WBInteraction000417590
      WBInteraction000421999
      WBInteraction000423843
      WBInteraction000427733
      WBInteraction000427877
      WBInteraction000429867
      WBInteraction000434286
      WBInteraction000437733
      WBInteraction000440485
      WBInteraction000442534
      WBInteraction000447439
      WBInteraction000454239
      WBInteraction000455653
      WBInteraction000459945
      WBInteraction000507153
      WBInteraction000507154
      WBInteraction000508568
      WBInteraction000513357
      WBInteraction000521571
  Map_info: Map: V Position: 3.93 Error: 0.005731
    Positive: Positive_clone: GS#LRP2
        T04H1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
    WBPaper00064648
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene