WormBase Tree Display for Gene: WBGene00003044

WBGene00003044 SMap: S_parent: Sequence: F18A1
  Identity: Version: 3
    Name: CGC_name: lir-1 Person_evidence: WBPerson351
      Sequence_name: F18A1.3
      Molecular_name (43)
      Other_name: CELE_F18A1.3 Accession_evidence: NDB BX284602
      Public_name: lir-1
    DB_info: Database: AceView gene 2H973
        WormQTL gene WBGene00003044
        SignaLink protein WBGene00003044
        WormFlux gene WBGene00003044
        NDB locus_tag CELE_F18A1.3
        NCBI gene 174240
        RefSeq protein (14)
        TrEMBL UniProtAcc (14)
        UniProt_GCRP UniProtAcc G5EBR0
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 20 Apr 2017 14:46:33 WBPerson2970 Name_change: Other_name: moag-2
        3 11 May 2017 14:27:53 WBPerson2970 Name_change: Other_name: moag-2 removed (incorrect)
    Status: Live
  Gene_info (12)
  Molecular_info: Corresponding_CDS (14)
    Corresponding_transcript (15)
    Other_sequence (16)
    Associated_feature (50)
    Transcription_factor: WBTranscriptionFactor000432
  Experimental_info: RNAi_result (26)
    Expr_pattern: Expr1324
      Expr1327
      Expr1020151
      Expr1031428
      Expr1148878
      Expr2013224
      Expr2031455
    Drives_construct: WBCnstr00010220
      WBCnstr00036265
    Construct_product: WBCnstr00036265
    Microarray_results (54)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00045774:clk-1_downregulated_CoQ10_independent
      WBPaper00048988:neuron_expressed
      WBPaper00049217:DAF-16_upregulated
      WBPaper00050053:muscle_enriched_Day4
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050496:unc-39(hp701)_regulated
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056139:gut-microbiota_downregulated
      WBPaper00056826:SGP_biased
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00059754:C.neoformans_H99_upregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061274:hypergravity_15xg_upregulated
      WBPaper00061340:Excretory_duct_and_pore
      WBPaper00061340:Glia
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
      WBPaper00061340:Parent_of_hyp3_ILsoDx
      WBPaper00061340:Parent_of_tail_spike_and_hyp10
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061466:nath-10(icb99)_upregulated
      WBPaper00061466:nath-10(icb102)_upregulated
      WBPaper00061527:trcs-2_5724-R11A8.7_17645
      WBPaper00061651:AMso_enriched
      WBPaper00061651:PHso_enriched
      WBPaper00061651:XXX_enriched
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064505:tamoxifen_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065841:5_1
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_1
      WBPaper00025032:cluster_57
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00034739:N2moreDR1350
      WBPaper00035227:heat_shock_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00037147:heatshock_upregulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00048624:hlh-25(ok1710)_upregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:oogenesis-enriched
    Interaction (51)
  Map_info: Map: II Position: 0.5091
    Positive: Positive_clone: F18A1 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4479
    Pseudo_map_position
  Reference (21)
  Remark: lir-1(mc33) is a 3 kb deletion within lir-1, which was isolated after TMP/UV mutagenesis by PCR-screening with primers in lir-1/lin-26. It is very tightly linked to a new deficiency named mcDf3. mcDf3 removes about 250-300 kb starting in the cosmid B0495, which is adjacent to F18A1 on it right.
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene