WormBase Tree Display for Gene: WBGene00002915
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WBGene00002915 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | H19M22 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | let-805 | Person_evidence | WBPerson533 | |||||
Sequence_name | H19M22.2 | ||||||||
Molecular_name (12) | |||||||||
Other_name | H19M22.a | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
H19M22.b | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
H19M22.e | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y71H2AL.d | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y71H2AL.e | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y71H2AL.f | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_H19M22.2 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | let-805 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:29 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | let | ||||||||
Allele (416) | |||||||||
Possibly_affected_by | WBVar02152894 | ||||||||
WBVar02152895 | |||||||||
WBVar02152896 | |||||||||
WBVar02152897 | |||||||||
WBVar02152898 | |||||||||
WBVar02152899 | |||||||||
WBVar02152900 | |||||||||
Strain | WBStrain00033530 | ||||||||
WBStrain00026589 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00022979 | ||||||||
00022980 | |||||||||
00022981 | |||||||||
00022982 | |||||||||
00022983 | |||||||||
00022984 | |||||||||
00091539 | |||||||||
00100800 | |||||||||
00100801 | |||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00007687 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00011326 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00017013 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020516 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | let-805 encodes myotactin, a novel single-transmembrane protein containing extracellular fibronectin repeats; genetic analyses indicate that LET-805 is essential for proper association between hypodermal fibrous organelles and the contractile apparatus of muscle cells; LET-805 is expressed in hypodermal cells and in the pharynx and localizes to basolateral membranes. | Paper_evidence | WBPaper00003643 | |||||
WBPaper00025137 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 09 Jan 2009 00:00:00 | ||||||||
Automated_description | Predicted to enable cytokine binding activity and cytokine receptor activity. Involved in hemidesmosome assembly. Located in hemidesmosome. Expressed in hypodermal cell; hypodermis; pharynx; touch receptor neurons; and uterine seam cell. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Is an ortholog of human TNXB (tenascin XB). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:9620 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||||
DOID:13359 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result (16) | ||||||||
Expr_pattern | Expr1192 | ||||||||
Expr1193 | |||||||||
Expr13531 | |||||||||
Expr1028294 | |||||||||
Expr1031372 | |||||||||
Expr1153159 | |||||||||
Expr2013078 | |||||||||
Expr2031310 | |||||||||
Antibody | WBAntibody00000057 | ||||||||
Microarray_results | SMD_H19M22.1 | ||||||||
SMD_H19M22.2 | |||||||||
175691_s_at | |||||||||
177186_s_at | |||||||||
189311_s_at | |||||||||
A_12_P110482 | |||||||||
A_12_P114894 | |||||||||
A_12_P149815 | |||||||||
A_12_P149816 | |||||||||
A_12_P149817 | |||||||||
A_12_P149818 | |||||||||
A_12_P149819 | |||||||||
Aff_H19M22.1 | |||||||||
Aff_H19M22.2 | |||||||||
GPL13394_WBGene00002915 | |||||||||
GPL13914_H19M22.2 | |||||||||
GPL14144_H19M22.2b_12307-12366_0.887_7_B | |||||||||
GPL14144_H19M22.2b_12567-12626_0.858_10_C | |||||||||
GPL14144_H19M22.2b_13077-13136_0.928_1_A | |||||||||
GPL19516_CGZ0011642 | |||||||||
GPL19516_CGZ0026465 | |||||||||
GPL19516_CGZ0026466 | |||||||||
GPL19516_CGZ0026467 | |||||||||
GPL19516_CGZ0026468 | |||||||||
GPL21109_Cat_H19M22.2c | |||||||||
GPL21109_H19M22.2a | |||||||||
GPL21109_H19M22.2d | |||||||||
GPL3518_CE26976 | |||||||||
GPL3518_CE26977 | |||||||||
GPL3518_CE26978 | |||||||||
GPL8304_CE_WBGene00002915_A | |||||||||
GPL8304_CE_WBGene00002915_B | |||||||||
GPL8673_H19M22_2aP11731 | |||||||||
GPL8673_H19M22_2aP11741 | |||||||||
GPL8673_H19M22_2aP11752 | |||||||||
GPL8673_H19M22_2bP12690 | |||||||||
GPL8673_H19M22_2bP12824 | |||||||||
GPL8673_H19M22_2bP12926 | |||||||||
GPL8673_H19M22_2cP00337 | |||||||||
GPL8673_H19M22_2cP00522 | |||||||||
GPL8673_H19M22_2cP00866 | |||||||||
GPL8673_H19M22_2dP02091 | |||||||||
GPL8673_H19M22_2dP02232 | |||||||||
GPL8673_H19M22_2dP02600 | |||||||||
GPL9450_H19M22.2a | |||||||||
GPL9450_H19M22.2b | |||||||||
GPL9450_H19M22.2c | |||||||||
cea2.d.04287 | |||||||||
cea2.d.04289 | |||||||||
cea2.d.07968 | |||||||||
Expression_cluster (205) | |||||||||
Interaction (19) | |||||||||
Map_info | Map | III | Position | -10.8567 | Error | 0.072737 | |||
Well_ordered | |||||||||
Positive | Positive_clone | H19M22 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 3945 | |||||||
4853 | |||||||||
4820 | |||||||||
5577 | |||||||||
Landmark_gene | |||||||||
Reference (27) | |||||||||
Remark | H19M22.2e was disconnected from let-805 [Blasiar D][030411 ck1] | ||||||||
Method | Gene |