WormBase Tree Display for Gene: WBGene00002915
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WBGene00002915 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | H19M22 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | let | ||||||
Allele (416) | |||||||
Possibly_affected_by | WBVar02152894 | ||||||
WBVar02152895 | |||||||
WBVar02152896 | |||||||
WBVar02152897 | |||||||
WBVar02152898 | |||||||
WBVar02152899 | |||||||
WBVar02152900 | |||||||
Strain | WBStrain00033530 | ||||||
WBStrain00026589 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00022979 | ||||||
00022980 | |||||||
00022981 | |||||||
00022982 | |||||||
00022983 | |||||||
00022984 | |||||||
00091539 | |||||||
00100800 | |||||||
00100801 | |||||||
Ortholog (31) | |||||||
Paralog | WBGene00007687 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00011326 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00017013 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00020516 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | let-805 encodes myotactin, a novel single-transmembrane protein containing extracellular fibronectin repeats; genetic analyses indicate that LET-805 is essential for proper association between hypodermal fibrous organelles and the contractile apparatus of muscle cells; LET-805 is expressed in hypodermal cells and in the pharynx and localizes to basolateral membranes. | Paper_evidence | WBPaper00003643 | |||
WBPaper00025137 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 09 Jan 2009 00:00:00 | ||||||
Automated_description | Predicted to enable cytokine binding activity and cytokine receptor activity. Involved in hemidesmosome assembly. Located in hemidesmosome. Expressed in hypodermal cell; hypodermis; pharynx; touch receptor neurons; and uterine seam cell. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Is an ortholog of human TNXB (tenascin XB). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:9620 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||
DOID:13359 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | ||||
Molecular_info | Corresponding_CDS | H19M22.2a | |||||
H19M22.2b | |||||||
H19M22.2c | |||||||
H19M22.2d | |||||||
Corresponding_transcript | H19M22.2a.1 | ||||||
H19M22.2b.1 | |||||||
H19M22.2c.1 | |||||||
H19M22.2d.1 | |||||||
Other_sequence (67) | |||||||
Associated_feature | WBsf644995 | ||||||
WBsf658705 | |||||||
WBsf658706 | |||||||
WBsf658707 | |||||||
WBsf658708 | |||||||
WBsf658709 | |||||||
WBsf658710 | |||||||
WBsf658711 | |||||||
WBsf658712 | |||||||
WBsf658713 | |||||||
WBsf658714 | |||||||
WBsf658715 | |||||||
WBsf658716 | |||||||
WBsf658717 | |||||||
WBsf658718 | |||||||
WBsf716536 | |||||||
WBsf717058 | |||||||
WBsf717059 | |||||||
WBsf717874 | |||||||
WBsf991576 | |||||||
WBsf991577 | |||||||
WBsf991578 | |||||||
WBsf991579 | |||||||
WBsf991580 | |||||||
WBsf991581 | |||||||
WBsf991582 | |||||||
WBsf1014440 | |||||||
WBsf1014441 | |||||||
WBsf1014442 | |||||||
WBsf1014443 | |||||||
WBsf1014444 | |||||||
WBsf1014445 | |||||||
WBsf224540 | |||||||
WBsf224541 | |||||||
Experimental_info | RNAi_result (16) | ||||||
Expr_pattern | Expr1192 | ||||||
Expr1193 | |||||||
Expr13531 | |||||||
Expr1028294 | |||||||
Expr1031372 | |||||||
Expr1153159 | |||||||
Expr2013078 | |||||||
Expr2031310 | |||||||
Antibody | WBAntibody00000057 | ||||||
Microarray_results (50) | |||||||
Expression_cluster (205) | |||||||
Interaction (19) | |||||||
Map_info | Map | III | Position | -10.8567 | Error | 0.072737 | |
Well_ordered | |||||||
Positive | Positive_clone | H19M22 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 3945 | |||||
4853 | |||||||
4820 | |||||||
5577 | |||||||
Landmark_gene | |||||||
Reference (27) | |||||||
Remark | H19M22.2e was disconnected from let-805 [Blasiar D][030411 ck1] | ||||||
Method | Gene |