WormBase Tree Display for Gene: WBGene00001996
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WBGene00001996 | SMap | S_parent | Sequence | K01G5 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hpl | ||||||
Allele (56) | |||||||
Strain (12) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (72) | |||||||
Contained_in_operon | CEOP3701 | ||||||
Ortholog (11) | |||||||
Paralog | WBGene00044225 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||
WBGene00195045 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00194861 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00017990 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00021913 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00017993 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00010363 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | hpl-2 encodes one of two C. elegans heterochromatin protein 1 (HP1) homologs; hpl-2 activity is required for silencing of transgenes in the germline, germline development, and vulval cell fate specification; in addition, hpl-2 negatively regulates RNA-mediated interference (RNAi); hpl-2 also functions redundantly with hpl-1 in larval, somatic gonad and germline development, and redundantly with hpl-1, lin-13, lin-15A, lin-9, and lin-35 in vulval development; HPL-2 reporter fusion proteins are expressed in nuclei throughout the life cycle with expression also seen in the germline and developing oocytes; in nuclei, HPL-2 fusion proteins are associated with condensed chromatin; HPL-2::RFP foci do not significantly overlap with those of HPL-1. | Paper_evidence | WBPaper00005176 | |||
WBPaper00026665 | |||||||
WBPaper00028349 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 09 May 2007 00:00:00 | ||||||
Automated_description | Enables H3K27me3 modified histone binding activity and chromatin binding activity. Involved in several processes, including developmental process involved in reproduction; nematode larval development; and regulation of gene expression. Located in nuclear periphery. Expressed in several structures, including AWCL; AWCR; hyp7 syncytium; and vulval precursor cell. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | K01G5.2a | |||||
K01G5.2b | |||||||
K01G5.2c | |||||||
Corresponding_transcript | K01G5.2a.1 | ||||||
K01G5.2b.1 | |||||||
K01G5.2c.1 | |||||||
Other_sequence | AF123573 | ||||||
AF123574 | |||||||
MH07860 | |||||||
Associated_feature | WBsf667411 | ||||||
WBsf227507 | |||||||
WBsf227508 | |||||||
WBsf227509 | |||||||
WBsf227510 | |||||||
Gene_product_binds (374) | |||||||
Transcription_factor | WBTranscriptionFactor001155 | ||||||
Experimental_info (12) | |||||||
Map_info | Map | III | Position | 5.23643 | Error | 0.026273 | |
Positive | Positive_clone | K01G5 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (88) | |||||||
Remark | Sequence connection from [Couteau F, Muller F, Palladino, F], 02/06/13 krb. | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |