WormBase Tree Display for Gene: WBGene00001979

WBGene00001979 SMap: S_parent: Sequence: K05C4
  Identity: Version: 2
    Name: CGC_name: hmp-2 Paper_evidence: WBPaper00026656
          Person_evidence: WBPerson498
      Sequence_name: K05C4.6
      Molecular_name: K05C4.6a
        K05C4.6a.1
        CE19974
        K05C4.6b
        CE46780
        K05C4.6b.1
      Other_name: mad-1 Person_evidence: WBPerson247
        CELE_K05C4.6 Accession_evidence: NDB BX284601
      Public_name: hmp-2
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:26 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 19 Apr 2011 16:01:24 WBPerson2970 Event: Acquires_merge: WBGene00003120
              Name_change: Other_name: mad-1
      Acquires_merge: WBGene00003120
    Status: Live
  Gene_info (11)
  Disease_info: Potential_model (36)
  Molecular_info: Corresponding_CDS: K05C4.6a
      K05C4.6b
    Corresponding_transcript: K05C4.6a.1
      K05C4.6b.1
    Other_sequence: AF016853
      CJC01111_1
      Acan_isotig07832
      JI167857.1
      Hbac_isotig02074
      ACC07441_2
      Tcir_isotig26154
      CJC02083_1
    Associated_feature: WBsf643855
      WBsf657106
      WBsf218819
    Transcription_factor: WBTranscriptionFactor000902
  Experimental_info: RNAi_result (63)
    Expr_pattern (11)
    Drives_construct: WBCnstr00003468
      WBCnstr00015159
      WBCnstr00015160
      WBCnstr00015161
      WBCnstr00036544
    Construct_product: WBCnstr00021788
      WBCnstr00036544
    Antibody: WBAntibody00000168
      WBAntibody00002580
      WBAntibody00002692
      WBAntibody00002937
    Microarray_results (23)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00041506:AB_enriched
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Oogenic
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046691:AB_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049920:Glucose-Diet_downregulated_N2
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050015:ifg-1(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:cytoplasm_specific
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056275:P.aeruginosa_downregulated
      WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
      WBPaper00056275:P.aeruginosa_upregulated
      WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
      WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
      WBPaper00056284:ints-5(RNAi)_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056617:adr-1(gv6)_upregulated_embryo_protein
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061274:hypergravity_15xg_upregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:npp-6-mtr-4_21425
      WBPaper00061651:M3_enriched
      WBPaper00064005:starvation_downregulated_aptf-1(gk794)_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064201:SNA-3_interacting
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064502:spe-44(fx110)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065225:nhr-42(tm1375)_downregulated_uninfected
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065841:96_0
      WBPaper00065841:125_0
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_4
      WBPaper00025032:cluster_158
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00029437:dcr-1_downregulated
      WBPaper00030985:Enterococcus_faecalis_upregulated
      WBPaper00030985:Erwinia_carotovora_upregulated
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032165:differentially_expressed_with_age_medoid_5
      WBPaper00034739:N2lessDR1350
      WBPaper00035873:dpy-10_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037611:GLD-2-associated
      WBPaper00037695:LD_3-day
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041906:I-3690_vs_OP50_3d
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      [cgc5767]:cluster_62
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:oogenesis-enriched
    SAGE_tag (13)
    Interaction (321)
    WBProcess: WBbiopr:00000017
      WBbiopr:00000073
  Map_info: Map: I Position: 26.585 Error: 0.039966
    Positive: Positive_clone: K05C4 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4409
        4544
        3414
        3415
      Pos_neg_data: 8951
    Pseudo_map_position
  Reference (108)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene