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WormBase Tree Display for Gene: WBGene00001887

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Name Class

WBGene00001887SMapS_parentSequenceZK131
IdentityVersion1
NameCGC_namehis-13Person_evidenceWBPerson160
Sequence_nameZK131.7
Molecular_nameZK131.7
ZK131.7.1
CE03253
Other_nameCELE_ZK131.7Accession_evidenceNDBBX284602
Public_namehis-13
DB_infoDatabaseAceViewgene2O111
WormFluxgeneWBGene00001887
NDBlocus_tagCELE_ZK131.7
NCBIgene191672
RefSeqproteinNM_064489.1
SwissProtUniProtAccP08898
UniProt_GCRPUniProtAccP08898
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhis
AlleleWBVar01499702
WBVar01498435
WBVar01498941
Legacy_information[C.elegansII] NMK. Histone type H3. HIS3 cluster. [Roberts et al. 1989; EM]
In_clusterHIS3_cluster
RNASeq_FPKM (74)
GO_annotation00109575
00109576
00109577
00109578
OrthologWBGene00024730Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00028396Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00142571Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00157068Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00190484Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00149514Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00191890Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00141754Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00140466Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00079888Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00079890Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00080192Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00068702Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00068735Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00041799Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00223686Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4899Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g4979Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g13608Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g14148Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g14598Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g14605Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g14617Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g18810Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g21470Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g2173Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g2179Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g9292Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g11976Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g13133Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g2031Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g2034Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6956Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP31.g10203Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13602Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g7066Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g7193Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g7233Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g8476Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g11031Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g14342Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10483Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00440.g10890Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_20677.g26510Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13781Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14830Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15388Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g21158Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g21184Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00060.g2916Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01864.g23579Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03328.g29828Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_08077.g38404Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_13163.g40807Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_013916Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_013950Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14932Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30253800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40065600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50115300Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50366400Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50371100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g6424Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00213572Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00244700Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00110455Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00286174Trichuris murisFrom_analysisWormBase-Compara
WBGene00286307Trichuris murisFrom_analysisWormBase-Compara
WBGene00298431Trichuris murisFrom_analysisWormBase-Compara
WBGene00299712Trichuris murisFrom_analysisWormBase-Compara
WBGene00299713Trichuris murisFrom_analysisWormBase-Compara
WBGene00300518Trichuris murisFrom_analysisWormBase-Compara
WBGene00300522Trichuris murisFrom_analysisWormBase-Compara
WBGene00300595Trichuris murisFrom_analysisWormBase-Compara
WBGene00302527Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000214Saccharomyces cerevisiaeFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
SGD:S000004976Saccharomyces cerevisiaeFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0051613Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053836Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053842Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053815Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053830Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053806Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053839Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053803Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053809Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053863Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053866Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053854Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053818Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053857Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053821Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053824Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053845Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053812Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053860Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053851Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053833Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053827Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053848Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-030722-8Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-070424-8Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-050626-58Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-080220-24Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-070410-87Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-131127-42Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-131127-56Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-131121-61Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-121214-143Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-160113-117Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4778Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
PhylomeDB
HGNC:4766Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4767Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4768Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4769Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4771Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4772Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4774Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4775Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4776Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:4773Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:20503Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:20505Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:32060Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
OrthoFinder
HGNC:25311Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448355Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448357Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2145541Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2448329Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448320Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448322Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448319Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448326Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2448349Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2448350Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2448351Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
MGI:2668828Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1311554Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1306445Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
RGD:1598076Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1591702Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1586732Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
RGD:7725170Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
RGD:7709329Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
Paralog (22)
Structured_descriptionConcise_descriptionhis-13 encodes an H3 histone; his-13 is contained within the histone gene cluster HIS3.Paper_evidenceWBPaper00001150
Curator_confirmedWBPerson48
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Is an ortholog of several human genes including H3C1 (H3 clustered histone 1); H3C3 (H3 clustered histone 3); and H3C4 (H3 clustered histone 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK131.7
Corresponding_transcriptZK131.7.1
Other_sequenceDviv_isotig00246
FG354250.1
Dviv_isotig00243
SSC01579_1
SS03303
Associated_featureWBsf222395
Experimental_infoRNAi_result (12)
Expr_patternExpr7195
Expr1162655
Drives_constructWBCnstr00003907
WBCnstr00036624
Construct_productWBCnstr00036624
AntibodyWBAntibody00000455
WBAntibody00000456
WBAntibody00000457
WBAntibody00000458
Microarray_results (30)
Expression_cluster (99)
Interaction (179)
Map_infoMapIIPosition20.3
PositivePositive_cloneZK131Inferred_automaticallyFrom sequence, transcript, pseudogene data
ZK831
Pseudo_map_position
ReferenceWBPaper00001150
WBPaper00005142
WBPaper00005182
WBPaper00030768
WBPaper00038491
WBPaper00040135
WBPaper00040574
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene