WormBase Tree Display for Gene: WBGene00001885
expand all nodes | collapse all nodes | view schema
| WBGene00001885 | SMap | S_parent | Sequence | ZK131 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | his-11 | Person_evidence | WBPerson160 | |||||
| Sequence_name | ZK131.5 | ||||||||
| Molecular_name | ZK131.5 | ||||||||
| ZK131.5.1 | |||||||||
| CE07075 | |||||||||
| Other_name | CELE_ZK131.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | his-11 | ||||||||
| DB_info | Database | AceView | gene | 2O113 | |||||
| WormFlux | gene | WBGene00001885 | |||||||
| NDB | locus_tag | CELE_ZK131.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001885|UniProtKB=P04255 | |||||||
| family | PTHR23428 | ||||||||
| NCBI | gene | 175029 | |||||||
| RefSeq | protein | NM_064491.8 | |||||||
| SwissProt | UniProtAcc | P04255 | |||||||
| UniProt_GCRP | UniProtAcc | P04255 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | his | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498435 | |||||||||
| WBVar01498941 | |||||||||
| Legacy_information | [C.elegansII] NMK. Histone type H2B. HIS3 cluster. [Roberts et al. 1989; EM] | ||||||||
| Strain | WBStrain00026487 | ||||||||
| In_cluster | HIS3_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (206) | |||||||||
| Paralog (16) | |||||||||
| Structured_description | Concise_description | his-11 encodes an H2B histone; by homology, HIS-11 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-11 is a replication-dependent histone locus that resides in the HIS3 cluster on chromosome II. | Paper_evidence | WBPaper00005142 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Involved in innate immune response. Part of chromatin. Is an ortholog of several human genes including H2BC12 (H2B clustered histone 12); H2BC17 (H2B clustered histone 17); and H2BC3 (H2B clustered histone 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK131.5 | |||||||
| Corresponding_transcript | ZK131.5.1 | ||||||||
| Other_sequence (23) | |||||||||
| Associated_feature | WBsf222396 | ||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr1162653 | ||||||||
| Expr2012438 | |||||||||
| Expr2030674 | |||||||||
| Marker76 | |||||||||
| Drives_construct | WBCnstr00005087 | ||||||||
| WBCnstr00036626 | |||||||||
| Construct_product (12) | |||||||||
| Microarray_results | 192280_s_at | ||||||||
| Expression_cluster (178) | |||||||||
| Interaction (209) | |||||||||
| Map_info | Map | II | Position | 20.3037 | |||||
| Positive | Positive_clone | ZK131 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Can't be part of clone F17E9 and subsequence F17E9.9 on IV AND part of HIS3_cluster on II. removing the chromosome IV links. [sdm 000920] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
