WormBase Tree Display for Gene: WBGene00001854
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| WBGene00001854 | SMap | S_parent | Sequence | F22F1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hil-3 | Person_evidence | WBPerson564 | |||||
| Sequence_name | F22F1.1 | ||||||||
| Molecular_name | F22F1.1 | ||||||||
| F22F1.1.1 | |||||||||
| CE04443 | |||||||||
| Other_name | H1.3 | Paper_evidence | WBPaper00004630 | ||||||
| CELE_F22F1.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | hil-3 | ||||||||
| DB_info | Database | AceView | gene | XI779 | |||||
| WormQTL | gene | WBGene00001854 | |||||||
| WormFlux | gene | WBGene00001854 | |||||||
| NDB | locus_tag | CELE_F22F1.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001854|UniProtKB=Q19743 | |||||||
| family | PTHR11467 | ||||||||
| NCBI | gene | 181073 | |||||||
| RefSeq | protein | NM_076974.6 | |||||||
| SwissProt | UniProtAcc | Q19743 | |||||||
| UniProt_GCRP | UniProtAcc | Q19743 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 12 Nov 2010 10:32:35 | WBPerson2970 | Name_change | Other_name | H1.3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hil | ||||||||
| Allele (22) | |||||||||
| Strain | WBStrain00032070 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (77) | |||||||||
| Paralog | WBGene00001852 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001853 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001898 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001855 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001856 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001857 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Predicted to be involved in chromosome condensation and negative regulation of DNA recombination. Predicted to be located in nucleus. Predicted to be part of nucleosome. Expressed widely. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia. Is an ortholog of human H1-8 (H1.8 linker histone). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9952 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4716) | ||||
| Molecular_info | Corresponding_CDS | F22F1.1 | |||||||
| Corresponding_transcript | F22F1.1.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf648348 | ||||||||
| WBsf663027 | |||||||||
| WBsf663028 | |||||||||
| WBsf1006065 | |||||||||
| WBsf1006066 | |||||||||
| WBsf1023374 | |||||||||
| WBsf1023375 | |||||||||
| WBsf236025 | |||||||||
| WBsf236026 | |||||||||
| WBsf236027 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00013773 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031287 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045345 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090693 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr568 | ||||||||
| Expr881 | |||||||||
| Expr1011005 | |||||||||
| Expr1031089 | |||||||||
| Expr1149269 | |||||||||
| Expr2012416 | |||||||||
| Expr2030652 | |||||||||
| Drives_construct | WBCnstr00036648 | ||||||||
| Construct_product | WBCnstr00036648 | ||||||||
| Antibody | WBAntibody00000355 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (347) | |||||||||
| Interaction (72) | |||||||||
| Map_info | Map | X | Position | -0.42571 | Error | 0.028038 | |||
| Positive | Positive_clone | F22F1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4876 | |||||||
| 4189 | |||||||||
| 4404 | |||||||||
| 5663 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002044 | ||||||||
| WBPaper00004630 | |||||||||
| WBPaper00030574 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046427 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064787 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
