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WormBase Tree Display for Gene: WBGene00001854

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Name Class

WBGene00001854SMapS_parentSequenceF22F1
IdentityVersion2
NameCGC_namehil-3Person_evidenceWBPerson564
Sequence_nameF22F1.1
Molecular_nameF22F1.1
F22F1.1.1
CE04443
Other_nameH1.3Paper_evidenceWBPaper00004630
CELE_F22F1.1Accession_evidenceNDBBX284606
Public_namehil-3
DB_infoDatabaseAceViewgeneXI779
WormQTLgeneWBGene00001854
WormFluxgeneWBGene00001854
NDBlocus_tagCELE_F22F1.1
PanthergeneCAEEL|WormBase=WBGene00001854|UniProtKB=Q19743
familyPTHR11467
NCBIgene181073
RefSeqproteinNM_076974.6
SwissProtUniProtAccQ19743
UniProt_GCRPUniProtAccQ19743
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
212 Nov 2010 10:32:35WBPerson2970Name_changeOther_nameH1.3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhil
Allele (22)
StrainWBStrain00032070
RNASeq_FPKM (74)
GO_annotation (15)
OrthologWBGene00058789Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WBGene00103491Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00143293Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00088372Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CSP21.g5230Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP32.g10335Caenorhabditis sulstoniFrom_analysisWormBase-Compara
Cnig_chr_V.g17385Caenorhabditis nigoniFrom_analysisWormBase-Compara
Sp34_40284800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_X0158600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19525Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00244699Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00249453Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00099312Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257205Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000006048Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
FB:FBgn0051617Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053807Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053861Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053852Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053816Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053804Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053813Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053810Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053828Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053834Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053849Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053819Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053855Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053843Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053801Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053831Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053837Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053840Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053864Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053858Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053822Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053846Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0053825Drosophila melanogasterFrom_analysisInparanoid
OMA
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-030131-337Danio rerioFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
Panther
ZFIN:ZDB-GENE-050320-42Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-050417-145Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-050522-103Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-030131-5155Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-131126-58Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-160113-46Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-160113-58Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-160113-52Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-121214-122Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-060825-170Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-121214-116Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-160113-29Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-131127-5Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-131127-26Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-131121-2Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-160113-38Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ZFIN:ZDB-GENE-160113-41Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
HGNC:4714Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
HGNC:4716Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
HGNC:4717Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
HGNC:4718Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
HGNC:4719Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
HGNC:4715Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
HGNC:18463Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
SonicParanoid
MGI:107502Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
MGI:95893Mus musculusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
MGI:1931526Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
MGI:1931527Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
MGI:1861461Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
MGI:1931523Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
MGI:2176207Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
RGD:2777Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
RGD:2776Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
RGD:1305706Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
RGD:1566236Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
RGD:1590638Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
RGD:1587893Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
RGD:1585568Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
ParalogWBGene00001852Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001853Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001898Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001855Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001856Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001857Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Predicted to be involved in chromosome condensation and negative regulation of DNA recombination. Predicted to be located in nucleus. Predicted to be part of nucleosome. Expressed widely. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia. Is an ortholog of human H1-8 (H1.8 linker histone).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:9952Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4716)
Molecular_infoCorresponding_CDSF22F1.1
Corresponding_transcriptF22F1.1.1
Other_sequence (17)
Associated_featureWBsf648348
WBsf663027
WBsf663028
WBsf1006065
WBsf1006066
WBsf1023374
WBsf1023375
WBsf236025
WBsf236026
WBsf236027
Experimental_infoRNAi_resultWBRNAi00013773Inferred_automaticallyRNAi_primary
WBRNAi00031287Inferred_automaticallyRNAi_primary
WBRNAi00045345Inferred_automaticallyRNAi_primary
WBRNAi00090693Inferred_automaticallyRNAi_primary
Expr_patternExpr568
Expr881
Expr1011005
Expr1031089
Expr1149269
Expr2012416
Expr2030652
Drives_constructWBCnstr00036648
Construct_productWBCnstr00036648
AntibodyWBAntibody00000355
Microarray_results (20)
Expression_cluster (347)
Interaction (72)
Map_infoMapXPosition-0.42571Error0.028038
PositivePositive_cloneF22F1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4876
4189
4404
5663
Pseudo_map_position
ReferenceWBPaper00002044
WBPaper00004630
WBPaper00030574
WBPaper00038491
WBPaper00046427
WBPaper00055090
WBPaper00064787
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene