WormBase Tree Display for Gene: WBGene00001838
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| WBGene00001838 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y51H1A | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | hda-10 | Person_evidence | WBPerson260 | |||||
| WBPerson2136 | |||||||||
| Sequence_name | Y51H1A.5 | ||||||||
| Molecular_name | Y51H1A.5 | ||||||||
| Y51H1A.5.1 | |||||||||
| CE24411 | |||||||||
| Other_name | CELE_Y51H1A.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | hda-10 | ||||||||
| DB_info | Database | AceView | gene | 2O177 | |||||
| WormQTL | gene | WBGene00001838 | |||||||
| WormFlux | gene | WBGene00001838 | |||||||
| NDB | locus_tag | CELE_Y51H1A.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001838|UniProtKB=Q9U266 | |||||||
| family | PTHR45634 | ||||||||
| NCBI | gene | 175039 | |||||||
| RefSeq | protein | NM_064509.7 | |||||||
| TREEFAM | TREEFAM_ID | TF106173 | |||||||
| TrEMBL | UniProtAcc | Q9U266 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U266 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 12 Apr 2012 16:15:43 | WBPerson2970 | Name_change | CGC_name | hda-10 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hda | ||||||||
| Allele (234) | |||||||||
| Strain | WBStrain00033091 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00098749 | ||||||||
| 00098750 | |||||||||
| 00098751 | |||||||||
| 00098752 | |||||||||
| 00098753 | |||||||||
| 00098754 | |||||||||
| Contained_in_operon | CEOP2620 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00001837 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00009663 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018319 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00219378 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001834 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001835 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001836 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007953 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009657 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable histone deacetylase activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex. Is an ortholog of human HDAC10 (histone deacetylase 10). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y51H1A.5 | |||||||
| Corresponding_transcript | Y51H1A.5.1 | ||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf222407 | ||||||||
| WBsf222408 | |||||||||
| Transcription_factor | WBTranscriptionFactor000359 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00020881 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091923 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086544 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091474 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062997 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075448 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057169 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037360 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020011 | ||||||||
| Expr1031083 | |||||||||
| Expr1160607 | |||||||||
| Expr2012382 | |||||||||
| Expr2030618 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (83) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | II | Position | 20.86 | Error | 0.119823 | |||
| Positive | Positive_clone | Y51H1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026289 | ||||||||
| WBPaper00027148 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00029005 | |||||||||
| WBPaper00031307 | |||||||||
| WBPaper00032356 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | NCBI lists Y51H1A.5 as hda-4, which has also been applied to C10E2.3. The name hda-6 avoids confusion, and reflects similarity to Dm HDAC6 and Mm HD6 | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
