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WormBase Tree Display for Sequence: Y51H1A

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Name Class

Y51H1ADNAY51H1A43667
SMapS_childGene_childWBGene000130941594218385
WBGene000130963161741536
WBGene000130951910725658
WBGene000018382577831107
CDS_child (212)
TranscriptY51H1A.3a.11594218373
Y51H1A.3b.11597518385
Y51H1A.4.11910725658
Y51H1A.5.12577831107
Y51H1A.6a.13161741536
Y51H1A.6b.13921541232
PCR_product (24)
Allele (1531)
Oligo_setAff_W02B8.14377741614
Aff_Y51H1A.271305712
Aff_Y51H1A.3A1594418291
Aff_Y51H1A.3B1602318291
Aff_Y51H1A.42264425337
Aff_Y51H1A.52974431018
Aff_Y51H1A.63552437074
Aff_Y51H1A.73939441231
Feature_object (375)
Feature_dataY51H1A:Polysome143667
Y51H1A:TranscriptionallyActiveRegion143667
Y51H1A:ChIPSeqTF143667
Y51H1A:TRF143667
Y51H1A:Dust143667
Y51H1A:inverted143667
Homol_data (20)
StructureFromSourceCHROMOSOME_II
Overlap_rightW02B843568
Overlap_leftF08G2
Clone_left_endW02B843568
Y51H1A1
Clone_right_endF08G2100
DB_infoDatabaseEMBLNDB_ACAL032644
NDB_SVAL032644.2
Secondary_accessionZ92821
DB_remark[121025] Sequence correction WBsf268435 : Insertion T1 bases from @ 27073
KeywordHTG
EMBL_dump_infoEMBL_dump_methodworm_EMBL-dump
OriginFrom_authorSmye R
From_laboratoryHX
Date_directory980710
SpeciesCaenorhabditis elegans
StrainWBStrain00000001
VisibleCloneY51H1A
PropertiesGenomic_canonical
ChecksumMD56bf1d6121cc72b515ebf45d71f505f96
StatusFinished10 Jul 1998 00:00:00
Submitted29 Oct 1998 00:00:00
Annotated01 Jan 1980 00:00:00
MapSequence-IIEndsLeft7949
Right7995
Interpolated_map_positionII20.6076
Assembly_tagsClone right end10097F08G2
Finished Left14Y51H1A
oligo70117027
serial#=y51h1.01
template=tn75a9.r1t      
sequence=TGAAGCTGTACGGGTTC
flags=
98149830
serial#=y51h1.03
template=tn76h6.f1l      
sequence=TCGGTAAAAACTTGGGC
flags=
1077510796
serial#=y51h1.05
template=tm80d10.s1      
sequence=CTACCAATTTTGGTCAATTTTG
flags=
tm52.6
1143311417
serial#=y51h1.06
template=to18b9.f1       
sequence=TACTAAAACCCCTCAGC
flags=
1773317749
serial#=Y51H1.07
template=tp37f8.r1t      
sequence=GTCGGATTTTCCACAGG
flags=
1846618488
serial#=Y51H1.16
template=tu61e6
sequence=CGCCTAATTGAAAAAAAAATTCC
flags=
1893718958
serial#=y51h1.10
template=tu61e6.q1tU     
sequence=CGGAAATTCAAATAGGAATTAG
flags=
1920419183
serial#=Y51H1.17
template=Y51H1b6
sequence=GTTTTTATAGGGGAAAAGTTTG
flags=
2072320743
serial#=y51h1.08
template=tm78f7.r1t      
sequence=CAAAAATAGCTGAAAAATGGC
flags=
2097320989
serial#=y51h1.12
template=to22b7.r2t      
sequence=ACAATTCAGGAGTGACC
flags=
2141621400
serial#=y51h1.11
template=tp34a10.r1t     
sequence=TGGGCTCCAAATTTTGC
flags=
2215122129
serial#=y51h1.13
template=tm80e11.r1t     
sequence=GTTTATTAAGGTCTGTTTAAAGC
flags=
2251022526
serial#=Y51H1.14
template=tp33h11.r1t     
sequence=ACACAAATGCTCTCCGC
flags=
2266222678
serial#=Y51H1.18
template=tn84f8
sequence=AGCCTACTGATGACACC
flags=
2311923101
serial#=Y51H1.15
template=tm77d2.p1t      
sequence=CTAACATGACGATTATCAC
flags=
2390123922
serial#=Y51H1.31
template=tm80h8
sequence=GAAAAATTTCACGAACATTCAG
flags=
2442424442
serial#=Y51H1.30
template=to19f4
sequence=CATTTTTCGCACTGTTTTC
flags=
2451324493
serial#=Y51H1.20
template=to23e10
sequence=GGTTTTTGGTGTAAATTTCAG
flags=
2491124894
serial#=Y51H1.19
template=to23e10
sequence=AGACCATCACCAAAAAAC
flags=
2695126930
serial#=Y51H1.19
template=tn75g12
sequence=CAAATCAGATTTCCAGAAAAAG
flags=
3098230965
serial#=Y51H1.20
template=to22d11
sequence=AATATTCTTCATCTCCCC
flags=
3315833141
serial#=Y51H1.21
template=tp33a3
sequence=AAATGTGGATTTTCAGGG
flags=
3299633018
serial#=Y51H1.16
template=tp34a5.r1t      
sequence=CACGAAAAACACATAATTTCAAG
flags=
3345633439
serial#=Y51H1.17
template=to18f12.r1t     
sequence=AAACTCGGGATTTTTAGC
flags=
3448134497
serial#=Y51H1.18
sequence=TCGCAGCTTTTCGTGTG
flags=
3517035151
serial#=Y51H1.15
template=
sequence=GAATTACGGGAATACAAAAC
flags=
3553935556
serial#=Y51H1.22
template=tm79f8
sequence=GACCAACACATTCACTAC
flags=
3698036964
serial#=Y51H1.23
template=tm79f8
sequence=TCTTCTCCCGTCTCATC
flags=
3725337233
serial#=Y51H1.22
template=tn76c8.f1       
sequence=CAATTTTGCACTGAAAAATCG
flags=
3911839135
serial#=Y51H1,21
template=to18e8.r1t      
sequence=AACAAAGTGATCGGAATC
flags=
4017240155
serial#=y51h1.04
template=to18d11.q2t     
sequence=GTCTCACAGTGAAAATTG
flags=
tm50.5
could be priming elsewhere
4037640360
serial#=y51h1.02
template=to18d11.r1t     
sequence=GCGGAAAACCATAAGCC
flags=
comment1600016002
retacking error trace is
to23a6.q1ta
1644216444
retracking error trace is
to23a6.q1ta
1737117372
this is tp37f9.q1lta retracking
error
1944919451
Retracking error trace is
tn85g1.q1lta
3097030971
this is not clone tp32a1 shotgun
ut
TeamLeader comment1964519672
2453, 2452, 1182 poss all same clone,
so 3500 extended
2936829370
query - look at #3077
jes happy with CCCGGC
3878639028
[ ] Tandem repeat 
[X] Single clone region 
[ ] Forced join 
[ ] Other 
Comment
annotation tag not needed.  I've 
extended cut-off data
3946639497
[ ] Tandem repeat 
[X] Single clone region 
[ ] Forced join 
[ ] Other 
Comment
annotation3462234962
[ ] Tandem repeat 
[X] Single clone region 
[ ] Forced join 
[ ] Other 
Comment
Region consisting solely of reads from a
short insert library derived from a pUC
clone.
3501735026
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[x] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Finished Right4366443667Y51H1A
Clone left end4356843571W02B8
MethodGenomic_canonical