WormBase Tree Display for Gene: WBGene00009663
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| WBGene00009663 | SMap | S_parent | Sequence | F43G6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | hda-5 | Person_evidence | WBPerson260 | |||||
| WBPerson2136 | |||||||||
| Sequence_name | F43G6.11 | ||||||||
| Molecular_name | F43G6.11 | ||||||||
| F43G6.11.1 | |||||||||
| CE31698 | |||||||||
| Other_name | CELE_F43G6.11 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | hda-5 | ||||||||
| DB_info | Database | AceView | gene | 2M91 | |||||
| WormQTL | gene | WBGene00009663 | |||||||
| WormFlux | gene | WBGene00009663 | |||||||
| NDB | locus_tag | CELE_F43G6.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009663|UniProtKB=Q8I4I9 | |||||||
| family | PTHR45634 | ||||||||
| NCBI | gene | 174811 | |||||||
| RefSeq | protein | NM_171045.7 | |||||||
| TrEMBL | UniProtAcc | Q8I4I9 | |||||||
| UniProt_GCRP | UniProtAcc | Q8I4I9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Mar 2012 12:16:35 | WBPerson1983 | Event | Split_into | WBGene00219378 | ||||
| 3 | 12 Apr 2012 16:15:43 | WBPerson2970 | Name_change | CGC_name | hda-5 | ||||
| Split_into | WBGene00219378 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hda | ||||||||
| Allele (75) | |||||||||
| Strain | WBStrain00055649 | ||||||||
| WBStrain00055648 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00083775 | ||||||||
| 00083776 | |||||||||
| 00083777 | |||||||||
| 00083778 | |||||||||
| 00083779 | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00001837 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001838 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00219378 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018319 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001834 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001835 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001836 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007953 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009657 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable histone deacetylase activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex. Is an ortholog of human HDAC10 (histone deacetylase 10). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F43G6.11 | |||||||
| Corresponding_CDS_history | F43G6.11b:wp231 | ||||||||
| Corresponding_transcript | F43G6.11.1 | ||||||||
| Other_sequence | AM743592.1 | ||||||||
| JI172800.1 | |||||||||
| Hbac_isotig01688 | |||||||||
| FK806295.1 | |||||||||
| TDC02717_1 | |||||||||
| OOC01981_1 | |||||||||
| AM743424.1 | |||||||||
| CBC08490_1 | |||||||||
| Associated_feature | WBsf989908 | ||||||||
| WBsf989909 | |||||||||
| WBsf222199 | |||||||||
| WBsf222200 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00091921 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014889 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047207 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025523 | ||||||||
| Expr1151067 | |||||||||
| Expr2012388 | |||||||||
| Expr2030624 | |||||||||
| Drives_construct | WBCnstr00032014 | ||||||||
| Construct_product | WBCnstr00032014 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (179) | |||||||||
| Interaction | WBInteraction000143731 | ||||||||
| WBInteraction000466595 | |||||||||
| Map_info | Map | II | Position | 4.04942 | |||||
| Positive | Positive_clone | F43G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027148 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
