WormBase Tree Display for Gene: WBGene00001836
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| WBGene00001836 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hda-3 | Person_evidence | WBPerson419 | |||||
| Sequence_name | R06C1.1 | ||||||||
| Molecular_name | R06C1.1 | ||||||||
| R06C1.1.1 | |||||||||
| CE18116 | |||||||||
| Other_name | CELE_R06C1.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | hda-3 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hda | ||||||||
| Allele (96) | |||||||||
| Possibly_affected_by | WBVar02153521 | ||||||||
| Legacy_information | [Mello C] hda for Histone DeAcetylase related. No mutants known. Predicted gene R06C1.? | ||||||||
| Strain | WBStrain00032312 | ||||||||
| WBStrain00048692 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Contained_in_operon | CEOP1660 | ||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00001834 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001835 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001837 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001838 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007953 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009657 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009663 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018319 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00219378 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | hda-3 encodes a member of the histone deacetylase family most similar to human histone deacetylase 1 (HD1) that affects radiation sensitivity. | Paper_evidence | WBPaper00005039 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable histone deacetylase activity and transcription corepressor activity. Involved in DNA protection. Located in nucleus. Expressed in several structures, including ASHL and ASHR. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); gastrointestinal system cancer (multiple); and prostate disease (multiple). Is an ortholog of human HDAC1 (histone deacetylase 1) and HDAC2 (histone deacetylase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (16) | ||||||||
| Molecular_info | Corresponding_CDS | R06C1.1 | |||||||
| Corresponding_transcript | R06C1.1.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf665010 | ||||||||
| WBsf665011 | |||||||||
| WBsf985414 | |||||||||
| WBsf985415 | |||||||||
| WBsf1010807 | |||||||||
| WBsf220380 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr12427 | ||||||||
| Expr15082 | |||||||||
| Expr1028648 | |||||||||
| Expr1031081 | |||||||||
| Expr1155067 | |||||||||
| Expr2012386 | |||||||||
| Expr2030622 | |||||||||
| Drives_construct | WBCnstr00041993 | ||||||||
| Construct_product | WBCnstr00041993 | ||||||||
| Regulate_expr_cluster | WBPaper00066085:hda-3(ok1991)_downregulated | ||||||||
| WBPaper00066085:hda-3(ok1991)_upregulated | |||||||||
| Antibody | WBAntibody00000446 | ||||||||
| WBAntibody00002653 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (66) | |||||||||
| Map_info | Map | I | Position | 13.0041 | Error | 0.008284 | |||
| Positive | Positive_clone | R06C1 | Person_evidence | WBPerson419 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4416 | |||||||
| Pseudo_map_position | |||||||||
| Reference (25) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
