WormBase Tree Display for Gene: WBGene00001821
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| WBGene00001821 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ham-2 | Person_evidence | WBPerson52 | |||||
| Sequence_name | C07A12.1 | ||||||||
| Molecular_name | C07A12.1a | ||||||||
| C07A12.1a.1 | |||||||||
| CE39669 | |||||||||
| C07A12.1b | |||||||||
| CE07992 | |||||||||
| C07A12.1c | |||||||||
| CE39670 | |||||||||
| C07A12.1b.1 | |||||||||
| C07A12.1c.1 | |||||||||
| Other_name | CELE_C07A12.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ham-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ham | ||||||||
| Allele (86) | |||||||||
| Legacy_information | [C.elegansII] n1332 : multiple HSN defects, abnormal HSN migration,reduced serotonin; Egl. [Desai et al. 1988; Garriga and Stern 1994; NG; NH; MT] | ||||||||
| Strain | WBStrain00027037 | ||||||||
| WBStrain00036785 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00009834 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00012405 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00018099 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00013438 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00015523 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00014131 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00011505 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | The ham-2 gene encodes a C2H2 zinc finger-containing protein required for proper migration of the hermaphrodite-specific neurons (HSNs) and proper attachment of the pharynx to the nose; HAM-2 is expressed in the nuclei of the HSNs during migration, and acts downstream of EGL-5, a posterior group Hox protein, in HSN specification; HAM-2 acts redundantly with UNC-86 to downregulate UNC-43 expression in the HSNs after migration is complete. | Paper_evidence | WBPaper00003422 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in cell fate determination; cell migration; and regulation of neuron differentiation. Located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C07A12.1a | |||||||
| C07A12.1b | |||||||||
| C07A12.1c | |||||||||
| Corresponding_CDS_history | C07A12.1a:wp154 | ||||||||
| C07A12.1b:wp154 | |||||||||
| Corresponding_transcript | C07A12.1a.1 | ||||||||
| C07A12.1b.1 | |||||||||
| C07A12.1c.1 | |||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf648023 | ||||||||
| WBsf716853 | |||||||||
| WBsf1004988 | |||||||||
| WBsf1004989 | |||||||||
| WBsf1004990 | |||||||||
| WBsf1004991 | |||||||||
| WBsf1022808 | |||||||||
| WBsf235597 | |||||||||
| WBsf235598 | |||||||||
| Transcription_factor | WBTranscriptionFactor000726 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00028610 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115864 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039960 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010356 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070163 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr670 | ||||||||
| Expr1016220 | |||||||||
| Expr1031069 | |||||||||
| Expr1144038 | |||||||||
| Expr2012365 | |||||||||
| Expr2030601 | |||||||||
| Drives_construct | WBCnstr00036667 | ||||||||
| Construct_product | WBCnstr00022552 | ||||||||
| WBCnstr00036667 | |||||||||
| Antibody | WBAntibody00000215 | ||||||||
| WBAntibody00001426 | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (157) | |||||||||
| Interaction (73) | |||||||||
| Map_info | Map | X | Position | -7.2966 | Error | 0.022262 | |||
| Positive | Positive_clone | C07A12 | Author_evidence | Wightman BC | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4395 | |||||||
| 4918 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
