WormBase Tree Display for Gene: WBGene00001711
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| WBGene00001711 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T16G1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | grl-2 | Person_evidence | WBPerson83 | |||||
| Sequence_name | T16G1.8 | ||||||||
| Molecular_name | T16G1.8 | ||||||||
| T16G1.8.1 | |||||||||
| CE20078 | |||||||||
| Other_name | CELE_T16G1.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | grl-2 | ||||||||
| DB_info | Database | AceView | gene | 5N425 | |||||
| WormQTL | gene | WBGene00001711 | |||||||
| WormFlux | gene | WBGene00001711 | |||||||
| NDB | locus_tag | CELE_T16G1.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001711|UniProtKB=Q9XUP5 | |||||||
| family | PTHR23261 | ||||||||
| NCBI | gene | 179777 | |||||||
| RefSeq | protein | NM_073837.5 | |||||||
| TREEFAM | TREEFAM_ID | TF316573 | |||||||
| TrEMBL | UniProtAcc | Q9XUP5 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUP5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | grl | ||||||||
| Allele (32) | |||||||||
| Strain | WBStrain00032742 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (21) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | grl-2 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central proline-rich low-complexity region, and a C-terminalGround-like (Grl) domain; GRL-2 is expressed in neurons, amphid socketcells, and other cells; the Grl domain is predicted to form acysteine-crosslinked protein involved in intercellular signalling, andit has subtle similarity to the N-terminal Hedge domain of HEDGEHOGproteins. | Paper_evidence | WBPaper00003717 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
| Automated_description | Expressed in head. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T16G1.8 | |||||||
| Corresponding_transcript | T16G1.8.1 | ||||||||
| Other_sequence | Acan_isotig20773 | ||||||||
| OF01472 | |||||||||
| OFC01293_1 | |||||||||
| PPC16416_1 | |||||||||
| Dviv_isotig26866 | |||||||||
| Associated_feature | WBsf661946 | ||||||||
| WBsf232718 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018774 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035615 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053418 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4441 | ||||||||
| Expr6701 | |||||||||
| Expr1013222 | |||||||||
| Expr1031024 | |||||||||
| Expr1156993 | |||||||||
| Expr2012265 | |||||||||
| Expr2030501 | |||||||||
| Drives_construct | WBCnstr00003017 | ||||||||
| WBCnstr00012005 | |||||||||
| WBCnstr00036749 | |||||||||
| Construct_product | WBCnstr00036749 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (141) | |||||||||
| Interaction | WBInteraction000227263 | ||||||||
| WBInteraction000335920 | |||||||||
| WBInteraction000381008 | |||||||||
| WBInteraction000431470 | |||||||||
| WBInteraction000447704 | |||||||||
| WBInteraction000448991 | |||||||||
| WBInteraction000465586 | |||||||||
| Map_info | Map | V | Position | 4.74272 | Error | 0.001987 | |||
| Positive | Positive_clone | T16G1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003717 | ||||||||
| WBPaper00028754 | |||||||||
| WBPaper00031588 | |||||||||
| WBPaper00052629 | |||||||||
| WBPaper00064105 | |||||||||
| Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
