WormBase Tree Display for Gene: WBGene00001627
expand all nodes | collapse all nodes | view schema
| WBGene00001627 | SMap | S_parent | Sequence | C55B7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-2 | Person_evidence | WBPerson228 | |||||
| Sequence_name | C55B7.2 | ||||||||
| Molecular_name | C55B7.2 | ||||||||
| C55B7.2.1 | |||||||||
| CE27887 | |||||||||
| Other_name | CELE_C55B7.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | gly-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (41) | |||||||||
| Strain | WBStrain00035688 | ||||||||
| WBStrain00035741 | |||||||||
| WBStrain00040598 | |||||||||
| WBStrain00040601 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | gly-2 encodes a functional homolog of mammalian UDP-N-acetylglucosamine alpha-6-d-mannoside beta-1,6-N-acetylglucosaminyltransferase V (GlcNAc-TV) which regulates polylactosamine-containing N-glycans; gly-2 is functionally interchangeable with the mammalian gene; GLY-2 is expressed in late embryos and in a subset of neurons in larvae, spermathecal and pharyngeal-intestinal valves and in specific vulval cells of adults; GLY-2 binds bovine calmodulin in vitro in a calcium-dependent manner. | Paper_evidence | WBPaper00005377 | |||||
| WBPaper00031011 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 04 May 2010 00:00:00 | ||||||||
| Automated_description | Enables calmodulin binding activity and hexosyltransferase activity. Involved in protein N-linked glycosylation. Located in nucleus. Expressed in hermaphrodite gonad; neurons; pharyngeal-intestinal valve; pm8; and somatic nervous system. Is an ortholog of human MGAT5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase) and MGAT5B (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C55B7.2 | |||||||
| Corresponding_transcript | C55B7.2.1 | ||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf643375 | ||||||||
| WBsf717510 | |||||||||
| WBsf217842 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00115272 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003240 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043226 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107710 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1901 | ||||||||
| Expr1020618 | |||||||||
| Expr1030974 | |||||||||
| Expr1147207 | |||||||||
| Expr2012142 | |||||||||
| Expr2030378 | |||||||||
| Drives_construct | WBCnstr00010512 | ||||||||
| WBCnstr00036813 | |||||||||
| Construct_product | WBCnstr00036813 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction | WBInteraction000541532 | ||||||||
| WBInteraction000556447 | |||||||||
| Map_info | Map | I | Position | 1.18449 | Error | 0.00676 | |||
| Positive | Positive_clone | C55B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4359 | |||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Sequence connection from [Warren C] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
