WormBase Tree Display for Gene: WBGene00001627
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WBGene00001627 | SMap | S_parent | Sequence | C55B7 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | gly | ||||||
Allele (41) | |||||||
Strain | WBStrain00035688 | ||||||
WBStrain00035741 | |||||||
WBStrain00040598 | |||||||
WBStrain00040601 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (22) | |||||||
Ortholog (38) | |||||||
Structured_description | Concise_description | gly-2 encodes a functional homolog of mammalian UDP-N-acetylglucosamine alpha-6-d-mannoside beta-1,6-N-acetylglucosaminyltransferase V (GlcNAc-TV) which regulates polylactosamine-containing N-glycans; gly-2 is functionally interchangeable with the mammalian gene; GLY-2 is expressed in late embryos and in a subset of neurons in larvae, spermathecal and pharyngeal-intestinal valves and in specific vulval cells of adults; GLY-2 binds bovine calmodulin in vitro in a calcium-dependent manner. | Paper_evidence | WBPaper00005377 | |||
WBPaper00031011 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson324 | |||||||
Date_last_updated | 04 May 2010 00:00:00 | ||||||
Automated_description | Enables calmodulin binding activity and hexosyltransferase activity. Involved in protein N-linked glycosylation. Located in nucleus. Expressed in hermaphrodite gonad; neurons; pharyngeal-intestinal valve; pm8; and somatic nervous system. Is an ortholog of human MGAT5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase) and MGAT5B (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C55B7.2 | |||||
Corresponding_transcript | C55B7.2.1 | ||||||
Other_sequence (16) | |||||||
Associated_feature | WBsf643375 | ||||||
WBsf717510 | |||||||
WBsf217842 | |||||||
Experimental_info | RNAi_result | WBRNAi00115272 | Inferred_automatically | RNAi_primary | |||
WBRNAi00003240 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043226 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107710 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1901 | ||||||
Expr1020618 | |||||||
Expr1030974 | |||||||
Expr1147207 | |||||||
Expr2012142 | |||||||
Expr2030378 | |||||||
Drives_construct | WBCnstr00010512 | ||||||
WBCnstr00036813 | |||||||
Construct_product | WBCnstr00036813 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (131) | |||||||
Interaction | WBInteraction000541532 | ||||||
WBInteraction000556447 | |||||||
Map_info | Map | I | Position | 1.18449 | Error | 0.00676 | |
Positive | Positive_clone | C55B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4359 | |||||
Pseudo_map_position | |||||||
Reference (11) | |||||||
Remark | Sequence connection from [Warren C] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |