WormBase Tree Display for Gene: WBGene00001498
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WBGene00001498 | SMap | S_parent | Sequence | F22B5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fars-3 | Person_evidence | WBPerson36 | |||||
WBPerson10953 | |||||||||
Sequence_name | F22B5.9 | ||||||||
Molecular_name | F22B5.9 | ||||||||
F22B5.9.1 | |||||||||
CE20708 | |||||||||
Other_name | frs-2 | ||||||||
CELE_F22B5.9 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | fars-3 | ||||||||
DB_info | Database (13) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 29 Jan 2010 14:16:16 | WBPerson2970 | Name_change | CGC_name | fars-3 | ||||
Other_name | frs-2 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fars | ||||||||
Allele (29) | |||||||||
Strain | WBStrain00036948 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (23) | |||||||||
Contained_in_operon | CEOP2348 | ||||||||
Ortholog (42) | |||||||||
Paralog | WBGene00021828 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable magnesium ion binding activity. Predicted to contribute to phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Predicted to be part of phenylalanine-tRNA ligase complex. Is an ortholog of human FARSB (phenylalanyl-tRNA synthetase subunit beta). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | EFO:MONDO:0100214 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17800) | ||||
Molecular_info | Corresponding_CDS | F22B5.9 | |||||||
Corresponding_transcript | F22B5.9.1 | ||||||||
Other_sequence (52) | |||||||||
Associated_feature | WBsf644470 | ||||||||
WBsf221747 | |||||||||
Experimental_info | RNAi_result | WBRNAi00096893 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00045283 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064949 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00008684 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00096954 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095577 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00064366 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093117 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025176 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1022536 | ||||||||
Expr1030899 | |||||||||
Expr1149213 | |||||||||
Expr2011432 | |||||||||
Expr2029670 | |||||||||
Drives_construct | WBCnstr00037973 | ||||||||
Construct_product | WBCnstr00037973 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (113) | |||||||||
Interaction (150) | |||||||||
Map_info | Map | II | Position | 0.812692 | Error | 0.000377 | |||
Positive | Positive_clone | F22B5 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00049828 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00063340 | |||||||||
Remark | dl1 : probably cytoplasmic | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |